Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22]
837 sequences; 9,013,692 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq83 329 1e-87
seq433 320 5e-85
seq384 78.8 3e-12
>seq83
Length=41462
Score = 329 bits (364), Expect = 1e-87
Identities = 280/343 (82%), Gaps = 3/343 (1%)
Strand=Plus/Plus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||||||||||||||||||||| ||| || |||||||||||||| |||||||||| |
Sbjct 21359 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 21418
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
| |||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||
Sbjct 21419 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 21478
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | ||
Sbjct 21479 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 21538
Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397
||||| |||||||| || ||| | | | ||||| |||||||||| || |||
Sbjct 21539 AGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAAT 21598
Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457
|||| ||||||||| |||||||||||||||||||||| ||| || |||||||||||
Sbjct 21599 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 21658
Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|||| | | |||||||||| || |||||||| || |||||||
Sbjct 21659 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 21700
>seq433
Length=22214
Score = 320 bits (354), Expect = 5e-85
Identities = 281/345 (81%), Gaps = 5/345 (1%)
Strand=Plus/Minus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||||||||||||||||||||| ||| || |||||||||||||| |||||||||| |
Sbjct 12874 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 12815
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
| |||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||
Sbjct 12814 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 12755
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | ||
Sbjct 12754 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 12695
Query 340 AGGCCTTCGGGTCGT-AAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAG 396
||||| |||||||| ||| ||| | | | ||||| |||||||||| || |||
Sbjct 12694 AGGCCCACGGGTCGTGAAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAA 12635
Query 397 GAAGCCCCGGCTAACTACG-TGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATC 455
|||| ||||||||| | ||||||||||||||||||||| ||| || |||||||||
Sbjct 12634 TAAGCATCGGCTAACTCTGTTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATC 12575
Query 456 CGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|||||| | | |||||||||| || |||||||| || |||||||
Sbjct 12574 CGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 12531
>seq384
Length=18326
Score = 78.8 bits (86), Expect = 3e-12
Identities = 51/56 (91%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGC 215
|||||||||||||||||||||| ||| || |||||||||||||| ||||||||||
Sbjct 11536 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGC 11481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497587465088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |