Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq83 630 8e-176 seq309 529 2e-145 >seq83 Length=41462 Score = 630 bits (698), Expect = 8e-176 Identities = 734/988 (74%), Gaps = 2/988 (0%) Strand=Plus/Plus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 ||||| | ||| ||||| || | ||||| || || | || ||||| || || || Sbjct 3500 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3559 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 |||||||| || | ||| | |||||| |||| || || | |||||||| |||||||| Sbjct 3560 ATGATCCCTACCTTATTGACGGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCC 3618 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 || || ||||| ||||| || |||||||| || | || || || | ||||| ||||| Sbjct 3619 TCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAA 3678 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 || || || ||||| || |||| |||| || || ||| | || || || || || Sbjct 3679 TATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAAT 3738 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101 |||||||| ||||| | || || ||| | || ||||||||||||| |||| | || Sbjct 3739 CTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGT 3798 Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 160161 | |||||| | | ||| | | || ||||||||||||||||| || | ||| Sbjct 3799 TCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCG 3858 Query 160162 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGC 160221 ||| |||||||| || ||||| ||||||||| || ||||| || || |||||| | || Sbjct 3859 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGC 3918 Query 160222 TGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160281 || ||| | ||||||| ||||||| || ||| || |||| ||||||||| || || Sbjct 3919 AGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 3978 Query 160282 CTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCC 160341 |||||||||||| || | ||| |||||||||| || || ||||| ||||||||||| || Sbjct 3979 CTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 4038 Query 160342 GTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGG 160401 || |||||| | || || ||||| |||||||| || || || ||| |||||||||||| Sbjct 4039 ATTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 4098 Query 160402 ATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGG 160461 || |||| ||||||||| | |||| || || ||||||| ||| || || | || Sbjct 4099 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 4158 Query 160462 TTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGG 160521 ||||| ||||||||||||||||| ||||| || ||||| || || ||||| || || || Sbjct 4159 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 4218 Query 160522 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGC 160581 || ||||||||||||||||| || |||||||| || || | ||||||||||| || Sbjct 4219 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGC 4278 Query 160582 TGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAA 160641 |||||||||||| || || |||||||| || || | ||| || || ||||| ||||| Sbjct 4279 TGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTTCAA 4338 Query 160642 TCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACAC 160701 || ||||||||||| |||||||| || | | |||| || || | || | ||||| Sbjct 4339 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTAATTAACAC 4398 Query 160702 TTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGC 160761 |||||| || | | ||||| ||| || || |||||||| ||||| || ||||| || Sbjct 4399 TTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 4458 Query 160762 TCACAACTTCCCTCTCGACCTTGCTGCT 160789 ||| ||||||||||| ||||| |||||| Sbjct 4459 TCATAACTTCCCTCTAGACCTAGCTGCT 4486 >seq309 Length=37764 Score = 529 bits (586), Expect = 2e-145 Identities = 723/997 (73%), Gaps = 11/997 (1%) Strand=Plus/Plus Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604 || |||||||||||||| |||||||| || || | || ||||| ||| ||| | ||| Sbjct 23148 GACCGTTTCGTTTTTGTAGGCTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 23207 Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664 | || |||||| | || || || || || | || ||||||||||||||| | || Sbjct 23208 GTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGGCC 23267 Query 161665 AGTTCCTATCTTGAGGG-TGCAAATTTTCTTA-CAGCGGCAGTTAGCACTCCAGCTGACG 161722 ||||| ||| | || || ||||| ||||||| | || || ||| ||||| ||| | Sbjct 23268 AGTTCTTATTTGGAAGGCTGCAA--TTTCTTAACTGCCGCGGTTTCTACTCCTGCTAATA 23325 Query 161723 CTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGG 161781 | | | ||||| || || || || ||||| ||||| || ||||| ||||| | Sbjct 23326 GTTTAGCACATTCG-TTATTGTTACTATGGGGGCCTGAAGCACAAGGAGATTTTACTCGT 23384 Query 161782 TGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATT 161841 ||| ||| | ||||| || |||| |||||| || ||||| || ||||| | || || Sbjct 23385 TGGTGTCAATTGGGGGGTCTGTGGACTTTTGTTGCTCTCCATGGAGCTTTTGGCCTAATA 23444 Query 161842 GGATTC-ATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATG 161899 || || ||| | ||||| || || |||||||| ||| || | | | ||||| |||| Sbjct 23445 GGNTTTTATGTTACGTCAATTCGAGCTTGCTCGATCTGTTCAAT-TGAGACCTTATAATG 23503 Query 161900 CTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGG 161959 | || || ||||||||||| |||||||||||||| || ||||| || ||||| || | Sbjct 23504 CAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTTCTGATTTATCCACTAG 23563 Query 161960 GACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTAC 162019 | ||||| |||||||| || || ||||| || || ||||| || | ||| | | Sbjct 23564 GTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCC 23623 Query 162020 TTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAG 162079 | || | ||||| || || |||||||| | || || || || |||||||| || || | Sbjct 23624 TATTTTTTCAAGGGTTTCATAATTGGACCTTGAACCCCTTTCATATGATGGGAGTTGCCG 23683 Query 162080 GTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCT 162139 || | ||||| | ||||||||| | || ||||| |||| || || ||||| || | | Sbjct 23684 GTGTATTGGGCGCTGCTTTGCTATGCGCCATTCATGGTGCTACCGTAGAAAATACTTTAT 23743 Query 162140 ACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGA 162199 |||| ||||| |||||||| ||| |||||| || | || |||| || || | Sbjct 23744 TTGAAGACGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAA 23803 Query 162200 CTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTA 162259 |||| || ||||| || || ||||| || ||||| || ||||| || |||||||| | Sbjct 23804 CTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCA 23863 Query 162260 ATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTT 162319 |||| |||||||| |||||||||||| | || || || || | ||| | |||| ||| Sbjct 23864 ATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTG 23923 Query 162320 CTATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTT-GTATCTCAGGAG 162378 || | || | | || || ||||| || || ||||| || ||||| || |||||||| Sbjct 23924 CTCTTGGAGTAGTCGGTCTAGCTCTGAACCTACGTGCCTATGACTTNCGTTTCTCAGGAA 23983 Query 162379 ATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAAT 162438 ||||| |||||||| |||||||||||||| || ||||||||||| ||||| ||||| || Sbjct 23984 ATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAAC 24043 Query 162439 GAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCT 162498 |||||| |||| || ||| |||| | ||||| || ||||| ||| || |||||||| Sbjct 24044 GAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCT 24103 Query 162499 GAGGAAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 ||||| ||||| || | || ||||| || | ||||| Sbjct 24104 GAGGAGGTTCTACCACGTGGAAACGCTCT-TTAATGG 24139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551370231228600