Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq83 607 1e-168 seq309 471 5e-128 >seq83 Length=41462 Score = 607 bits (672), Expect = 1e-168 Identities = 720/968 (74%), Gaps = 6/968 (1%) Strand=Plus/Plus Query 188872 ACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-C 188930 ||| | |||||||| || | || ||||| ||||| ||||||||||||| ||| | | | Sbjct 3521 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGAC 3579 Query 188931 TGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCA 188989 ||||| |||| || || | ||||| | ||||| || || |||||||||||||| | Sbjct 3580 GGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTA 3638 Query 188990 TCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTG 189049 | || ||||| || | || || || | || |||||||| || || || ||||| || Sbjct 3639 TTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAATATTATTTCCGGTGCCATTA 3698 Query 189050 TCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCG 189109 | ||| | || || || ||| | || || ||||| ||||||||||| || || | | Sbjct 3699 TTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTG 3758 Query 189110 ATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCA 189169 |||| ||| | |||||||||||||||| |||| | || | |||||| | | ||| Sbjct 3759 ATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCG 3818 Query 189170 TCTACGCCTACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGA 189229 | |||||||||||||||||||| || | |||||| |||||||| ||||||| Sbjct 3819 TAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCGTCTGGGTATGCGACCTTGGA 3878 Query 189230 TCTGC-ATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCT 189288 | ||| |||| || || || ||||||||||| || ||||||| || || |||| || Sbjct 3879 T-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTGATCTACCCA 3937 Query 189289 TTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTAC 189348 | |||||||| ||| ||||| | ||||| | || ||| ||| || ||||| | | Sbjct 3938 ATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTC 3997 Query 189349 ATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTC 189408 ||| |||| ||||| || |||||||||||||| |||||||| || |||||| | || || Sbjct 3998 ATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTG 4057 Query 189409 GCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCA 189468 || ||||| ||||| || || || ||| || ||||||||||| | || || ||| Sbjct 4058 GCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGT 4117 Query 189469 CTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAA 189528 || | | |||||||| |||| || || || | ||||||| || || ||||| Sbjct 4118 TTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAG 4177 Query 189529 GAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATAT 189588 |||||||| || || ||||| || |||||||| ||||| || || | |||||||||||| Sbjct 4178 GAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATAT 4237 Query 189589 GCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGT 189648 || ||||||||||| ||||| | ||||||||||| ||||| ||||| || || ||| Sbjct 4238 GCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGT 4297 Query 189649 ATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTC 189708 |||||||||||||| | || | ||||| ||||| |||||||| ||||| ||||| ||| Sbjct 4298 ATCTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTC 4357 Query 189709 AATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAAC 189768 || ||||| | |||| |||| |||||||| | ||||| ||||| || | ||||| Sbjct 4358 AACCAATCTGTAGTTGACAGTCAGGGTCGTGTAATTAACACTTGGGCTGATATCATCAAC 4417 Query 189769 CGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGAT 189828 |||||| |||||||||||||| |||||||| ||||| ||||| ||||||||||| || Sbjct 4418 CGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGAC 4477 Query 189829 CTGGCAGC 189836 || || || Sbjct 4478 CTAGCTGC 4485 >seq309 Length=37764 Score = 471 bits (522), Expect = 5e-128 Identities = 719/1017 (71%), Gaps = 6/1017 (1%) Strand=Plus/Plus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 ||||| || | ||||||||| | | || || || || ||||| || ||||| || Sbjct 23118 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGT 23177 Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 190106 || | || ||||| ||| ||| |||| | || || ||| | || || || || ||| Sbjct 23178 CTATTGCTCTTTCCTTGTGCCTATTTCGCTGTAGGGGGTTGGTTCACAGGTACAACCTTT 23237 Query 190107 GCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGG-TGCTAATTTTCT 190165 | || ||||| ||||| ||| | || ||| ||| | || || ||| ||||| | Sbjct 23238 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGC-AATTTCTT 23296 Query 190166 TACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 190225 || || || || || || |||||| || | | | ||||| | | |||| ||||| Sbjct 23297 AACTGCCGCGGTTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTGTTACTATGGGG 23356 Query 190226 TCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGT 190285 |||||| | ||||| ||||| | ||| ||| | ||||| || ||| ||||||| Sbjct 23357 GCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGGGGTCTGTGGACTTTTGT 23416 Query 190286 GGCGCTCCACGGGGCTTTCGCTCTAATTGGATTC-ATGCTTCGTCAGTTTGAACTGGCAC 190344 || ||||| || ||||| | ||||| || || ||| | ||||| || || || || | Sbjct 23417 TGCTCTCCATGGAGCTTTTGGCCTAATAGGNTTTTATGTTACGTCAATTCGAGCTTGCTC 23476 Query 190345 G-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTT 190403 | ||| || | | | ||||| ||||| || || ||||||||||| || ||||||||| Sbjct 23477 GATCTGTTCAAT-TGAGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTT 23535 Query 190404 GTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTC 190463 ||| || ||||| || || || || ||||| || |||||||||| || || || Sbjct 23536 GTTTCTGTATTTCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTT 23595 Query 190464 GGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTG 190523 ||||| ||||| || || || ||| |||| || || || || || ||||| ||||| || Sbjct 23596 GGTGTAGCAGCTATATTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACCTTG 23655 Query 190524 AACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATC 190583 |||||||| || |||||||| ||||| ||| | |||| | || | || | || || Sbjct 23656 AACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCCATT 23715 Query 190584 CATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAA 190643 ||||||| || ||||| |||||||| | |||||| ||||| ||||| || || Sbjct 23716 CATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCCGT 23775 Query 190644 GCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGG 190703 || || || | || |||| ||||| || ||||| |||||||| || ||||| || ||| Sbjct 23776 GCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 23835 Query 190704 TCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTT 190763 || ||||||||||| ||||| || ||||| | ||||| |||||||||||| | ||| Sbjct 23836 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 23895 Query 190764 GTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTT 190823 || || || | ||| | |||| | | | || | | ||||| ||||| ||||| Sbjct 23896 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTCTGAACCTA 23955 Query 190824 CGTGCTTATGACTTT-GTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGAC 190882 ||||| |||||||| || || || || || | ||||| |||||||| || || ||||| Sbjct 23956 CGTGCCTATGACTTNCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGAC 24015 Query 190883 TTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGA 190942 ||| ||||| |||||||| || || || |||||| |||| | ||| |||| || || Sbjct 24016 TTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGA 24075 Query 190943 TCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 ||| || ||||| || || |||| || || || || | ||| | || |||||||| Sbjct 24076 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 24132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634073365938000