Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq83 715 0.0 seq309 491 5e-134 >seq83 Length=41462 Score = 715 bits (792), Expect = 0.0 Identities = 755/989 (76%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 ||||| | ||| ||||| || | || ||||||||| | || ||||| ||||| || Sbjct 3500 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3559 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGC-TTTATTACTGCGTTCGTTGCTGCTCC 160690 |||||||| || | ||| | ||||| |||| ||||||| ||| ||| |||||||||| Sbjct 3560 ATGATCCCTACCTTATTGACGGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCC 3618 Query 160691 CCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAA 160750 || || ||||| || ||||| |||||||| ||| | || || || | || |||||||| Sbjct 3619 TCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAA 3678 Query 160751 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCAT 160810 || || || ||||| || ||||| |||| || || ||| | || || ||||| || Sbjct 3679 TATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAAT 3738 Query 160811 TTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGT 160870 |||||||| ||||| ||||||||||| | ||||| ||||||||||| |||| | || Sbjct 3739 CTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGT 3798 Query 160871 ATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCG 160930 | |||||| | | ||| | || ||||||||||| |||||||| ||| || ||| Sbjct 3799 TCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCG 3858 Query 160931 CCTCGGCATGCGCCCCTGGATCTGC-GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTG 160989 || || ||||| || ||||| ||| ||||||||||| || |||||||| ||||| | | Sbjct 3859 TCTGGGTATGCGACCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 3917 Query 160990 CAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTA 161049 |||| ||| | |||| || |||||||||| ||| |||||||||||||| || || | Sbjct 3918 CAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 3977 Query 161050 TCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACC 161109 |||||||||| ||||| |||||| |||| |||||||| || ||||||||||| ||||||| Sbjct 3978 TCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 4037 Query 161110 CCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATG 161169 | || |||||||| || || |||||||| ||||| || || || ||| || ||||||| Sbjct 4038 CATTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 4097 Query 161170 GTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATG 161229 |||| |||| |||||| || | | |||||||| || || || || || | | Sbjct 4098 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 4157 Query 161230 GTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCG 161289 |||||| || |||||||| ||||| || || || ||||| || ||||||||||| || | Sbjct 4158 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 4217 Query 161290 GTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCG 161349 | || ||||||||||||| ||| ||||||||||| |||||||| ||||||||||| | Sbjct 4218 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAG 4277 Query 161350 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCA 161409 | || |||||||| || ||||||||||| || || | ||| | ||| ||||| |||| Sbjct 4278 CTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTTCA 4337 Query 161410 ACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACA 161469 |||| || || ||||| |||||||| || | | || ||||||| || | |||| Sbjct 4338 ACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTAATTAACA 4397 Query 161470 CCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATG 161529 | |||||||| | | || ||||||||||||||||||||||| ||||| || ||||||| Sbjct 4398 CTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 4457 Query 161530 CTCACAACTTCCCTCTGGATCTCGCTGCT 161558 |||| ||||||||||| || || |||||| Sbjct 4458 CTCATAACTTCCCTCTAGACCTAGCTGCT 4486 >seq309 Length=37764 Score = 491 bits (544), Expect = 5e-134 Identities = 706/990 (71%), Gaps = 4/990 (0%) Strand=Plus/Plus Query 163917 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCA 163976 || || || || ||||| || ||||| || || | || ||||| ||| ||| | || Sbjct 23148 GACCGTTTCGTTTTTGTAGGCTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 23207 Query 163977 ATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCG 164036 | || || ||| | || |||||||| ||||| || ||||| ||||| || | || Sbjct 23208 GTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGGCC 23267 Query 164037 TCTAGTTACCTTGAGGG-TGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGC 164095 | ||| | || || ||| |||||| | || || || || || || |||||| || Sbjct 23268 AGTTCTTATTTGGAAGGCTGC-AATTTCTTAACTGCCGCGGTTTCTACTCCTGCTAATAG 23326 Query 164096 TATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGGTG 164155 | | | ||||| | | |||| ||||| ||||| | || || || || | | | || Sbjct 23327 TTTAGCACATTCGTTATTGTTACTATGGGGGCCTGAAGCACAAGGAGATTTTACTCGTTG 23386 Query 164156 GTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATCGG 164215 ||| ||| | ||||| || ||| ||||||| || |||| ||| |||| | || || || Sbjct 23387 GTGTCAATTGGGGGGTCTGTGGACTTTTGTTGCTCTCCATGGAGCTTTTGGCCTAATAGG 23446 Query 164216 -TTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCTA 164274 ||| ||| | || || || || |||| || ||| | | || || ||||| | Sbjct 23447 NTTTTATGTTACGTCAATTCGAGCTTGCTCGATCTGTTCAATTGAGACCTTATAATGCAA 23506 Query 164275 TTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGC 164334 | || ||||||||||| |||||||| ||||| || || || || || || || || | Sbjct 23507 TCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTTCTGATTTATCCACTAGGTC 23566 Query 164335 AATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGT 164394 | ||| ||||||||||||| || ||||| || || || || || ||||| || | | Sbjct 23567 AGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTAT 23626 Query 164395 TCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCA 164454 | | ||||| || ||||| ||||| | |||||||| ||||||||||| ||||| || Sbjct 23627 TTTTTCAAGGGTTTCATAATTGGACCTTGAACCCCTTTCATATGATGGGAGTTGCCGGTG 23686 Query 164455 TCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTG 164514 | | || | |||| | || || || |||||||||||||||||||| |||||||| |||| Sbjct 23687 TATTGGGCGCTGCTTTGCTATGCGCCATTCATGGTGCTACCGTAGAAAATACTTTATTTG 23746 Query 164515 AAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTT 164574 |||| ||||| ||||||| ||| || || | || ||||||| ||||| |||| Sbjct 23747 AAGACGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 23806 Query 164575 ACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATA 164634 | || |||||||| || |||||||| ||||| || || ||||| ||||||| ||||| Sbjct 23807 ATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATA 23866 Query 164635 AGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTA 164694 | |||||||| || ||||||||| | ||||| || || | || | |||| ||| || Sbjct 23867 AACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTC 23926 Query 164695 TTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGA-TTTTGTGTCTCAGGAGATT 164753 |||| | ||||||| || || || || ||||| ||||| || || |||||||| ||| Sbjct 23927 TTGGAGTAGTCGGTCTAGCTCTGAACCTACGTGCCTATGACTTNCGTTTCTCAGGAAATT 23986 Query 164754 AGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAA 164813 | ||||| || ||||||||||||||||| ||||| || || || || ||| | || ||| Sbjct 23987 CGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAA 24046 Query 164814 GGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGAG 164873 || | || || |||||||| | ||| ||||| || ||| || |||| || ||| Sbjct 24047 GGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 24106 Query 164874 GAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 || ||||| || | || ||||| || ||| Sbjct 24107 GAGGTTCTACCACGTGGAAACGCTCTTTAA 24136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559322148030800