Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq28156 129 6e-28 seq955 109 6e-22 seq32925 89.7 5e-16 seq34365 82.4 8e-14 seq34361 77.0 3e-12 seq25373 73.4 4e-11 >seq28156 Length=27067 Score = 129 bits (142), Expect = 6e-28 Identities = 140/182 (77%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68 ||| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| || Sbjct 7162 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTATGCTTTGTATACATTAGCA 7221 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||| |||| | |||||| | |||| ||||| || || | |||| | |||||| Sbjct 7222 TGGGATAACATTATAGGATTT-CGGTCCTATTAGGTTGGCCTTCAGGATTGGA-GTAATG 7279 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 | |||| ||| ||||||||| | ||||| || |||| ||||||||||||||||||| Sbjct 7280 TTTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 7339 Query 189 AT 190 || Sbjct 7340 AT 7341 >seq955 Length=36551 Score = 109 bits (120), Expect = 6e-22 Identities = 135/181 (75%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | || ||||| |||| ||| | |||||||| ||| Sbjct 18554 CTGTTACTTTGAATAAATTAGAGTGCTCTAAGCAAGCCTACGCTTTGTATACATTAGCAT 18495 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| || || | ||| || ||||||| Sbjct 18494 GGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTGCGGGATCGGA-GTAATGA 18437 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || || | ||||||||||||| |||||| Sbjct 18436 TTAACAAGGACAGTCGGGGGCATTCGTATTTCATAGTAAGAGGTGAAATTCTTTGATTTA 18377 Query 190 T 190 | Sbjct 18376 T 18376 >seq32925 Length=16956 Score = 89.7 bits (98), Expect = 5e-16 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATG 70 || ||||||| || ||||||||| | |||||||| || | |||| |||||| |||| Sbjct 1540 CTGTTACTTTAAAGAAATTAGAGTGCTCAAAGCAAGCTTGGGCTCTTTAACATTATCATG 1481 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 | |||| | || ||| | |||| ||||| || || | ||| || ||||||| Sbjct 1480 GGATAACAATATTGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAA-TAATGAT 1423 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 || ||| ||| ||||| | ||||| || |||| ||||||||||| ||||||||| Sbjct 1422 TAAAGGGGACAGTTGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCWTGGATTTAT 1363 >seq34365 Length=4201 Score = 82.4 bits (90), Expect = 8e-14 Identities = 99/133 (74%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | || | ||||| || || | ||| Sbjct 1319 ATACATTAGCATGGGATAACATTATAGGATTTCCG-TCCTATTACGTTGGCCTTYGGGAT 1261 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| ||||||||| | ||||| || |||| |||||||| Sbjct 1260 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA 1202 Query 178 TTCTTGGATTTAT 190 ||||||||||||| Sbjct 1201 TTCTTGGATTTAT 1189 >seq34361 Length=12192 Score = 77.0 bits (84), Expect = 3e-12 Identities = 99/133 (74%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | |||||||||| | | | ||| Sbjct 5642 ATACATTAGCATGGGATAACATTATAGGATTT-CGGTTCTATTACATTTGCCTTCGGGAT 5700 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| |||||||| || ||||| || |||| |||||||| Sbjct 5701 CGGA-GTAATGATTAACAGGGACAGTCGGGGCATTC-GTATTTCATAGTCACAGGTGAAA 5758 Query 178 TTCTTGGATTTAT 190 ||||||||||||| Sbjct 5759 TTCTTGGATTTAT 5771 >seq25373 Length=6275 Score = 73.4 bits (80), Expect = 4e-11 Identities = 98/133 (74%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | |||| |||| || || | | ||| Sbjct 5072 ATACATTAGCATGGGATAACATTATAGGATTT-CGGTCTTATTACGTTGGCCTTTGGGAT 5014 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 | |||||||| |||| ||| ||||||||| | ||||| || |||| |||||||| Sbjct 5013 CAGA-GTAATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCATAGGTGAAA 4955 Query 178 TTCTTGGATTTAT 190 |||| ||||||| Sbjct 4954 TTCT--GATTTAT 4944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511768893760