Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq43907 98.7 2e-18 seq22489 86.0 1e-14 seq15468 84.2 4e-14 seq1059 84.2 4e-14 seq36297 82.4 1e-13 seq5809 82.4 1e-13 seq28918 75.2 2e-11 >seq43907 Length=1880 Score = 98.7 bits (108), Expect = 2e-18 Identities = 172/245 (70%), Gaps = 12/245 (5%) Strand=Plus/Plus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||| ||| ||| | || ||| ||||| |||| || ||| | ||| || Sbjct 113 ATGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTARTAATCGACGAAATGCTTCG 172 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 |||||| | ||| | | ||| || ||||| || ||| ||| |||| |||| Sbjct 173 GGGAGTT-GAAAATAAGAATAGATTCGGAGATTCCCTAATAGGGCAACCT-----TTTGA 226 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186 | ||| |||||||| || ||| | |||| | ||| ||||||||||||||||| | Sbjct 227 ---ACTGC-TGCTGAATCCA-AGGCAGGCAAGATACAACCTGGCGAACTGAAACATCTTA 281 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246 || | ||||||||||| ||| | ||||||| ||||| |||| ||||||| ||| Sbjct 282 GTTCCAAAAGGAAAAGAAAGCAAAAGTGATTCCCGTAGTAGCGGCGTGCGAAATAGGAGC 341 Query 247 AGCCT 251 ||||| Sbjct 342 AGCCT 346 >seq22489 Length=38994 Score = 86.0 bits (94), Expect = 1e-14 Identities = 153/219 (70%), Gaps = 12/219 (5%) Strand=Plus/Minus Query 34 CGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGAGTGAGCAAACACACTTTGATCC 93 ||| ||||| ||||||| | ||| | ||| || ||||| | ||| | | | ||| | Sbjct 23819 CGAGGAAGGGCGTAGTAATTGACGAAATGCTTCGAGGAGTT-GAAAATAAGCATAGATTC 23761 Query 94 GCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACATAGGTA 153 | ||| || ||||| ||| |||| || | | | || ||||| ||| |||| Sbjct 23760 GGAGAGTTTCGAATAGGGCAACCA------TTCGAACTGT---TGTTGAATCCATGGGTA 23710 Query 154 TGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCG 212 ||||| || ||| || |||||||||||| | ||||| |||||||||| ||| | Sbjct 23709 TGCAAGAGACAACTTGGTGAACTGAAACATGTTAGTAGTCAGTGGAAAAGAAAGCAAAAG 23650 Query 213 AGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 | ||||| ||||| | |||||||||||||| ||||| Sbjct 23649 TG-TTCCCGTAGTAGCGACGAGCGAAATGGGAGCAGCCT 23612 >seq15468 Length=73464 Score = 84.2 bits (92), Expect = 4e-14 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 159 AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTC 218 || |||| |||||||||||| |||| |||||| ||||||||||| ||| | ||||| Sbjct 61194 AGAGAACCAGGCGAACTGAAAGATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTC 61253 Query 219 CCAAAGTAGTGGCGAGCGAAATGGGA 244 || ||||| |||| ||||||||||| Sbjct 61254 CCGTAGTAGCGGCGGGCGAAATGGGA 61279 >seq1059 Length=42677 Score = 84.2 bits (92), Expect = 4e-14 Identities = 83/106 (78%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 140 TGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGA 198 ||||| ||| |||| |||| || |||| || ||||| || |||| |||||| |||| Sbjct 14150 TGAATCCATGGGTAGGCAAGAGAGAACAAGGAAAACTGGAAGATCTTAGTAGCCAGAGGA 14209 Query 199 AAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 ||||||| ||| | |||||||| ||||| |||| || |||||||| Sbjct 14210 AAAGAAAGCAAAAGTGATTCCCATAGTAGCGGCGGGCAAAATGGGA 14255 >seq36297 Length=8871 Score = 82.4 bits (90), Expect = 1e-13 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| ||| || | | || | |||| || ||||||||| |||| |||||| | Sbjct 4571 TGCTGAATCCATGGGCAGGAAAGATAGAACCAGGTGAACTGAAAGATCTTAGTAGCCAGA 4630 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGG 242 |||||||||| ||| | ||||||| ||||| |||| ||||||||| Sbjct 4631 GGAAAAGAAAGCAAAAGTGATTCCCGTAGTAGCGGCGGGCGAAATGG 4677 >seq5809 Length=50905 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 5/113 (4%) Strand=Plus/Plus Query 142 AATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAG--GA 198 ||| ||| || |||||| || ||| |||||||||||||||| |||||| ||| || Sbjct 32218 AATTCATGGGCATGCAAGAGACAACTAGGCGAACTGAAACATCGTAGTAGC--CAGGAGA 32275 Query 199 AAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 ||||||| ||| | ||||||| ||||| ||||||| |||| ||| ||||| Sbjct 32276 AAAGAAAACAAAAGTGATTCCCGTAGTAGCGGCGAGCAAAATCGGAGCAGCCT 32328 >seq28918 Length=5367 Score = 75.2 bits (82), Expect = 2e-11 Identities = 113/156 (72%), Gaps = 11/156 (7%) Strand=Plus/Minus Query 66 CGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTT 125 |||||||| | ||| | | | ||||| ||||| |||||| ||| |||| ||| Sbjct 5013 CGGGGAGTT-GAAAATAAGCATAGATCCAGAGATTCCCGAATAGGGCAACC------TTT 4961 Query 126 GGGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCT 184 | | ||| |||||||| ||| || | | || || ||| ||||||||||||||||| Sbjct 4960 CGAAC--TGC-TGCTGAATCCATGGGCAGGAAAGAGACAACCTGGCGAACTGAAACATCT 4904 Query 185 AAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCC 220 |||||| ||||||||||| ||| | ||||||| Sbjct 4903 TAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCC 4868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 917972080704