Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq4574 311 1e-82 seq2963 304 2e-80 seq19856 251 1e-64 seq40597 224 1e-56 seq13143 199 6e-49 seq63483 114 2e-23 seq11192 109 8e-22 seq512 105 1e-20 seq29087 104 4e-20 seq715 98.7 1e-18 seq45331 95.1 2e-17 seq5376 84.2 3e-14 seq8310 78.8 1e-12 seq26413 75.2 2e-11 seq3687 75.2 2e-11 seq13745 73.4 6e-11 >seq4574 Length=39985 Score = 311 bits (344), Expect = 1e-82 Identities = 194/206 (94%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 51 TAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATT 110 |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 39348 TAGGAATT-CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATAACGATGAAATT 39290 Query 111 TCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGC 170 ||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| Sbjct 39289 TCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAAGCTCGTTGAATACATCAGTGTAGC 39230 Query 171 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGT 230 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39229 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGC 39170 Query 231 GGCCTAAAAGGCCAT-CTCCCTCGAA 255 ||||||||||||| | |||||| || Sbjct 39169 GGCCTAAAAGGCCGTAGTCCCTCTAA 39144 Score = 131 bits (144), Expect = 3e-28 Identities = 82/87 (94%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 170 CGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCG 229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39084 CGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCG 39025 Query 230 TGGCCTAAAAGGCCAT-CTCCCTCGAA 255 ||||||||||||| | |||||| || Sbjct 39024 CGGCCTAAAAGGCCGTAGTCCCTCTAA 38998 >seq2963 Length=192782 Score = 304 bits (336), Expect = 2e-80 Identities = 210/235 (89%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 5 AAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCG 64 |||||||| |||||||||||| | ||| ||||||||| |||||||||||||||| |||| Sbjct 33623 AAAGGGCATGGACGTAGTCAATGTGAG-TTGATGACTTGCGCTTACTAGGAATT-CCTCA 33680 Query 65 TTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCG 124 ||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||| Sbjct 33681 TTGAAGACCAATAATTGCAATGATCTATCCTCATCACAATGAAATTTCAAAGATTACCCG 33740 Query 125 GACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCA 184 | |||||| ||||||| ||| ||||||||||| || |||||||| || |||||||||| Sbjct 33741 GGCCTGTCAGCCAAGGCTATAAGCTCGTTGAATATATTAGTGTAGCACGTGTGCGGCCCA 33800 Query 185 GAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 |||||||||||||||||||||| ||| |||||||||||||||| | |||||||| Sbjct 33801 GAACATCTAAGGGCATCACAGAGCTGCTATTGCCTCAAACTTCTGCAGCCTAAAA 33855 Score = 275 bits (304), Expect = 9e-72 Identities = 217/256 (85%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| ||| ||||||| ||||||| ||| ||||||||||| |||| ||| | Sbjct 23092 GTACAAAGGGCATAGACATAGTCAATGCGAGCT-GATCACTCGCGCTTAATAGGTATT-C 23149 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 23150 CTCATTGAAGACCAACAATTGCAATGATCTATCCCCAACACTATGAAATTTCAAAGATTA 23209 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 || | | |||| ||||||| ||| ||||||||||||||| || ||| || || || Sbjct 23210 CCTAGGCTTGTCAGCCAAGGCTATAAGCTCGTTGAATACATCCATGCAGCACGTGTCCGA 23269 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 || ||||||||||| ||||||||| |||| |||||||||||||||||| ||||||||| Sbjct 23270 CCGAGAACATCTAAAGGCATCACAAACCTATTATTGCCTCAAACTTCCACAGCCTAAAAG 23329 Query 241 GCCAT-CTCCCTCGAA 255 ||| | |||||| || Sbjct 23330 GCCTTAGTCCCTCTAA 23345 Score = 131 bits (144), Expect = 3e-28 Identities = 106/127 (83%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 130 GTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACA 189 ||||||||||| ||| || |||||||||||| ||||||| || ||| || | ||| || Sbjct 11027 GTCGGCCAAGGCTATAAGCTTGTTGAATACATCCGTGTAGCACGTGTGTGGTCGAGACCA 11086 Query 190 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTC 248 |||||||| ||||||||||| ||||||||||||||||||| || ||||||||| | || Sbjct 11087 TCTAAGGGTATCACAGACCTATTATTGCCTCAAACTTCCGCAGCTTAAAAGGCCGTAGTC 11146 Query 249 CCTCGAA 255 |||| || Sbjct 11147 CCTCTAA 11153 >seq19856 Length=31609 Score = 251 bits (278), Expect = 1e-64 Identities = 190/221 (86%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 ||||| |||||||| |||||||| ||| | ||||||||||||||| |||||||| ||| Sbjct 28019 ACAAAAGGCAGGGATGTAGTCAATATGAGAT-GATGACTCGCGCTTATTAGGAATT-CCT 28076 Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACC 122 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 28077 CGTTGAAGACCAACAATTGCAATGATATATCCCCATCACGATGAAATTTCAAATATTACC 28136 Query 123 CGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCC 182 | || ||| |||||| ||| |||| || ||||||||| |||||||| |||| | | Sbjct 28137 CACTCCAGTCAACCAAGGCTATATACTCATTTAATACATCAATGTAGCGCCTGTGCAGAC 28196 Query 183 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 223 |||||||| |||||||||||||||| || |||||||| ||| Sbjct 28197 CAGAACATATAAGGGCATCACAGACATGCTATTGCCTAAAA 28237 >seq40597 Length=1900 Score = 224 bits (248), Expect = 1e-56 Identities = 164/187 (88%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 43 GCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG 102 |||||||||||| ||| |||||||||||| ||| |||||||||| |||||||||| |||| Sbjct 2 GCGCTTACTAGGGATT-CCTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACG 60 Query 103 ATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT 161 | | | ||| | |||||||||||||||| |||| ||||| || |||| || | | | Sbjct 61 ACGGAGTTTAACAAGATTACCCGGACCTTTCGGACAAGGAAGTA--CTCGCTGGCTCCGT 118 Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 178 Query 222 AACTTCC 228 ||||||| Sbjct 179 AACTTCC 185 >seq13143 Length=33875 Score = 199 bits (220), Expect = 6e-49 Identities = 173/212 (82%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 49 ACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAA 108 |||| ||||| | | |||||| |||||||||| ||||||||||| |||||||||||||| Sbjct 14427 ACTAAGAATT-CTTTGTTGAAAACCAACAATTTTAATGATCTATCTCCATCACGATGAAA 14485 Query 109 TTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTA 168 ||||||| |||| |||||| ||||| |||| ||| ||| ||||||||||| | |||| Sbjct 14486 TTTCAAAAATTATCCGGACGTGTCGATCAAGACTATAAACTTGTTGAATACATTAATGTA 14545 Query 169 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT----TATTGCCTCAAAC 224 ||||| || || |||||| |||||||||||||||||| |||| ||||||| ||||| Sbjct 14546 ACGCGCATGGGGTCCAGAATATCTAAGGGCATCACAGATCTGTTATATATTGCCGCAAAC 14605 Query 225 TTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 ||||| ||||||| || | | |||||| || Sbjct 14606 TTCCGCAGCCTAAATGGTCGTAGTCCCTCTAA 14637 >seq63483 Length=21411 Score = 114 bits (126), Expect = 2e-23 Identities = 73/77 (95%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||| Sbjct 9352 GTACAAAGGGCAGGGACGTAGTCAACGCAAGC-TGATGACTCGCGCTTACTAGGAA-TTC 9295 Query 61 CTCGTTGAAGACCAACA 77 |||||| |||||||||| Sbjct 9294 CTCGTTAAAGACCAACA 9278 >seq11192 Length=26670 Score = 109 bits (120), Expect = 8e-22 Identities = 73/79 (92%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| ||||||||||||||| || ||| ||||||||||||||||||||||| ||| Sbjct 6727 GTACAAAGGACAGGGACGTAGTCAATGCAAGC-TGATGACTCGCGCTTACTAGGAA-TTC 6670 Query 61 CTCGTTGAAGACCAACAAT 79 ||| ||||||||||||||| Sbjct 6669 CTCATTGAAGACCAACAAT 6651 >seq512 Length=109893 Score = 105 bits (116), Expect = 1e-20 Identities = 71/77 (92%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| | ||||||||||||||||||| | ||||||||| ||||||||||| ||| Sbjct 15138 GTACAAAGGGAAAGGACGTAGTCAACGCGAGC-TAATGACTCGCACTTACTAGGAA-TTC 15195 Query 61 CTCGTTGAAGACCAACA 77 ||||||||||||||||| Sbjct 15196 CTCGTTGAAGACCAACA 15212 >seq29087 Length=19738 Score = 104 bits (114), Expect = 4e-20 Identities = 72/79 (91%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| |||||||||||||| |||||| ||||||||| ||||||||||||| ||| Sbjct 5706 GTACAAAGGATAGGGACGTAGTCAATGCGAGC-TGATGACTCACGCTTACTAGGAA-TTC 5649 Query 61 CTCGTTGAAGACCAACAAT 79 ||| ||||||||||||||| Sbjct 5648 CTCATTGAAGACCAACAAT 5630 >seq715 Length=150120 Score = 98.7 bits (108), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 12/211 (6%) Strand=Plus/Minus Query 33 TTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTAT 92 |||| ||||| | ||||||| || | || |||||| ||| |||||||||||| || Sbjct 121568 TTGACGACTCACATTTACTAGAAAAATT-TCAATGAAGATCAATAATTGCAATGATTTAG 121510 Query 93 CCCCATCACGATGAAATTTCAAAGA--TTACCCGGACCTGTCGGCCAAGGTGATAGACTC 150 ||||||||| ||||||||||||| |||||| | ||| || |||| ||| |||| Sbjct 121509 TTCCATCACGAAGAAATTTCAAAGAGTATACCCGATCATGTAGGTCAAGACTATA-ACTC 121451 Query 151 GTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATC-ACAGAC-C 208 |||||||||| | || | ||| || | || || ||||| ||| ||| || Sbjct 121450 GTTGAATACA------TTGCACATGTGTTGCTTATAATATTTAAGGAAATCAACAAACTT 121397 Query 209 TGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 |||||| |||| |||||| ||||| | ||| Sbjct 121396 TGTTATAGCCTTAAACTTATGTGGCATTAAA 121366 >seq45331 Length=95177 Score = 95.1 bits (104), Expect = 2e-17 Identities = 77/91 (85%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| || | ||||| |||| || || ||||||| ||| |||||||| |||| | Sbjct 3650 GTACAAAGGACAAGAACGTAATCAAAGCAAG-TTGATGAGTCGTGCTTACTAAAAATT-C 3707 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTA 91 ||||||||||||||| |||| |||||||||| Sbjct 3708 CTCGTTGAAGACCAAAAATTACAATGATCTA 3738 >seq5376 Length=90698 Score = 84.2 bits (92), Expect = 3e-14 Identities = 58/63 (92%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 1 GTACAAA-GGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTT 59 || |||| |||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 21575 GTCCAAATGGGCAGGGACGTAGTCAACGCGAG-TTGATGACTCGCGCTTACTAGGAAATA 21517 Query 60 CCT 62 ||| Sbjct 21516 CCT 21514 >seq8310 Length=118339 Score = 78.8 bits (86), Expect = 1e-12 Identities = 59/67 (88%), Gaps = 2/67 (3%) Strand=Plus/Minus Query 11 CAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAG 70 || ||||||| |||| |||| || |||||||||| |||||||||| ||||||||||||| Sbjct 18007 CAAGGACGTAATCAATGCGAACTA-ATGACTCGCGTTTACTAGGAA-TTCCTCGTTGAAG 17950 Query 71 ACCAACA 77 ||||||| Sbjct 17949 ACCAACA 17943 >seq26413 Length=21328 Score = 75.2 bits (82), Expect = 2e-11 Identities = 141/205 (69%), Gaps = 13/205 (6%) Strand=Plus/Minus Query 41 TCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCA 100 ||| | |||||| |||| |||| |||||||| |||||| ||||| ||| |||||| Sbjct 20608 TCGTGTTTACTAAAAATT-CCTCATTGAAGAC---CAATTGTAATGAATTAT-TCCATCA 20554 Query 101 CGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA 160 || |||||| |||||||| || | | | ||| | || || ||| |||||| Sbjct 20553 TCATAAAATTTTGAAGATTACTCGAATTTATGAATCAAAGCTATGAACATGTTAAATACA 20494 Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 || ||||| | | |||| |||||||| ||| ||| || || |||| ||| Sbjct 20493 TCTGTGTAAAGTGTATGCGATCCAGAACA--------CATAACAAACTTGCTATTATCTC 20442 Query 221 AAACTTCCGTGGCCTAAAAGGCCAT 245 |||||| | || |||||| | ||| Sbjct 20441 AAACTTTCACGGTCTAAAAAGTCAT 20417 >seq3687 Length=311310 Score = 75.2 bits (82), Expect = 2e-11 Identities = 148/212 (70%), Gaps = 9/212 (4%) Strand=Plus/Plus Query 14 GGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACC 73 ||||||||| | ||||| | ||| | | ||||||| ||||||| | ||||||| Sbjct 304900 GGACGTAGTTAGCGCGAAAT-GATTATTTTTACTTACTAAGAATTTCA-CATTGAAGATT 304957 Query 74 AACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCG 133 || |||| ||| || | | ||||| || ||| ||||| |||| | | ||| | Sbjct 304958 AATAATTATAATAATTTTTTTTTATCACAATAAAAAATCAAA-ATTATTAGAGCATGTTG 305016 Query 134 GCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTA 193 | | | | ||| ||||||||||||||| | | || ||| || | ||| ||||||||| Sbjct 305017 GTTAGGCT-ATAAACTCGTTGAATACATGAATATA--GCGTGTTCAGCCTGGAACATCTA 305073 Query 194 AG---GGCATCACAGACCTGTTATTGCCTCAA 222 || || ||||| || |||||||||||| Sbjct 305074 AGCATAATATTACAGATCTATTATTGCCTCAA 305105 >seq13745 Length=119753 Score = 73.4 bits (80), Expect = 6e-11 Identities = 51/57 (89%), Gaps = 1/57 (2%) Strand=Plus/Minus Query 106 AAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATC 162 ||||||||||||||||| || |||||||||||||| ||| |||||||||||| ||| Sbjct 27547 AAATTTCAAAGATTACCTGG-CCTGTCGGCCAAGGCTATAAACTCGTTGAATAAATC 27492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751536207760