Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq40597 131 9e-29 seq4574 131 9e-29 seq18512 123 1e-26 seq12053 107 1e-21 seq2963 89.7 3e-16 seq39867 84.2 1e-14 seq38565 84.2 1e-14 >seq40597 Length=1900 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 487 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 546 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 547 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 603 >seq4574 Length=39985 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 38620 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 38561 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 38560 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 38504 >seq18512 Length=5413 Score = 123 bits (136), Expect = 1e-26 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||| |||||||||| || |||||||||| ||||| || |||||| ||| Sbjct 3325 AACCCAAAAACTTTGATTTTTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCCG 3266 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 3265 ATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 3210 >seq12053 Length=7592 Score = 107 bits (118), Expect = 1e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||| | || ||||| || Sbjct 1826 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGCCCTAAAAGCAACATTCGCC 1885 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||| ||| ||||| |||| |||||| ||||||||||||||| ||||| Sbjct 1886 GATCCCTGGTCGACATCGTTTATGGTTGAGACTAGAACGGTATCTGATCGTATTCGA 1942 >seq2963 Length=192782 Score = 89.7 bits (98), Expect = 3e-16 Identities = 90/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||| || ||||||||||||| |||||||||| ||||| || |||||| ||| Sbjct 23624 AACCAGAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCCG 23683 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| |||||||| ||| ||||||||||| |||||| | |||| || || || Sbjct 23684 ATCCCTGGTCGGCATCATTTTTGGTTAAGACTAGGACGGT-TATGATTGTATTTGA 23738 Score = 75.2 bits (82), Expect = 6e-12 Identities = 83/108 (77%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 11 ACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCCCGATCCCTAG 69 ||||||||||||| ||| |||| | ||| |||| || |||||| |||||||| | Sbjct 11440 ACTTTGATTTCTCATAACGTGCTG-GCGTAGTCCTAAAAGCAACATCTGTCGATCCCTGG 11498 Query 70 TCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| ||| |||| |||| | ||||||| ||||| ||||||| Sbjct 11499 TCGGCATCATTTTTGGTTGAGACAAGGACGGTAAATGATCCTCTTCGA 11546 >seq39867 Length=6570 Score = 84.2 bits (92), Expect = 1e-14 Identities = 88/116 (76%), Gaps = 6/116 (5%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||| ||||||||||||| |||||||||| ||||| ||| | | | | Sbjct 3260 AACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTC------CTAAAAGCAACAG 3207 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| |||||| | ||| |||| |||||| || ||||||||| |||||||| Sbjct 3206 ATCCCTGACCGGCATCGCTTAAGGTTGAGACTAGGAAAGTATCTGATGGTCTTCGA 3151 >seq38565 Length=91735 Score = 84.2 bits (92), Expect = 1e-14 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 4 CCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGT-CAAAATGATAACATCGCCCGA 62 || ||| ||||||||||||| ||||||| || |||| | ||| | ||||| ||| Sbjct 12495 CCAAAAAACTTTGATTTCTCATAAGGTGTTGATGGAGTACTAAAAG-CAACATATGTCGA 12553 Query 63 TCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| |||| ||| ||||| |||| || ||| ||||||||| ||| ||||| || Sbjct 12554 TCCCTCGTCGACATCGTTTATGGTTGAGGCTAGGACGGTATCAGATTGTCTTTGA 12608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278233836960