Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq40597 459 5e-127 seq18512 215 9e-54 seq2963 179 7e-43 seq38565 165 1e-38 seq4574 152 9e-35 seq2597 147 4e-33 seq12053 138 2e-30 seq9295 91.5 3e-16 >seq40597 Length=1900 Score = 459 bits (508), Expect = 5e-127 Identities = 291/314 (93%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| || |||||||||||||||| ||| |||||| Sbjct 917 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGCGTGGCGGGGA 858 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 ||||||||||||| |||||||||||||||| || | |||||||| ||||||||||||| Sbjct 857 AACAGGACTTTTACTGTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 798 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 797 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 738 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 737 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 678 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||||||||||||||||||||||||||| || |||||||||||||||||||||| || Sbjct 677 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGA 619 Query 305 ACGAAAGTTAGGGG 318 ||||||||| |||| Sbjct 618 ACGAAAGTTGGGGG 605 >seq18512 Length=5413 Score = 215 bits (238), Expect = 9e-54 Identities = 199/248 (80%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| ||||||| |||| |||| | | | |||||||| Sbjct 2963 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCTAGCCTACGCTCTGTAAATATTAGCAT 3022 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | ||| ||||| ||||| | ||| || |||||||| Sbjct 3023 GGGATAACATTATAGGATTTT-GGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 3081 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 3082 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 3141 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 3142 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 3200 Query 311 GTTAGGGG 318 ||| |||| Sbjct 3201 GTTGGGGG 3208 Score = 86.0 bits (94), Expect = 1e-14 Identities = 75/91 (82%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 2800 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 2859 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATT 161 || |||| | |||||| | |||| ||||| Sbjct 2860 GGGATAACATTATAGGA-TTTCGGTCCTATT 2889 >seq2963 Length=192782 Score = 179 bits (198), Expect = 7e-43 Identities = 191/248 (77%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 ||||||||||||| ||||||||||| |||||||| |||| ||||| | |||||||||||| Sbjct 11793 CTTTTACTTTGAACAAATTAGAGTGCTCAAAGCAAGCCTATGCTCTGTATACATTAGCAT 11734 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | ||| ||||| |||| | ||| || ||||||| Sbjct 11733 GGGATAAAATTATAGGATTTT-GGTCCTATTACATTGGCCTTCGGGATCGAATTAATGAT 11675 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| |||| ||| | ||||| || ||||||||||||||| | ||||| | Sbjct 11674 TAACAGGGAATGTCGAGGGCATTCGTATTTCATAGTCAGAGGTGAAATTTATAGATTTTT 11615 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 |||| ||| ||| |||||| || ||||||||||||||| |||||| |||||||| Sbjct 11614 GAAAGATGAACAACTATGAAAGCATTTGCCAAGGATGTTTTCAATAATCA-AGAACGAAA 11556 Query 311 GTTAGGGG 318 || |||| Sbjct 11555 TTTGGGGG 11548 Score = 138 bits (152), Expect = 2e-30 Identities = 181/247 (73%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATG 131 ||||||||||||| ||||| | ||| | |||||| |||| || | ||||||||| ||| Sbjct 23983 CTTTTACTTTGAACAAATTCGGGTGCTTAAAGCAAGCCTACACTTGTATACATTAGTATG 23924 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 | |||| | |||||| | |||| ||||| || | | || || |||||||| Sbjct 23923 GGATAAAATTATAGGATTT-CGGTCCTATTACATTCGCCTTCGCGATCGAATTAATGATT 23865 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 || | ||| ||| || || |||| || |||||||||| ||| || ||||||| Sbjct 23864 AACATGGACCATCGAGGCATTC-GTATCTCATATTCAGAGGTGATATTTTTAGATTTATG 23806 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 ||||| || |||| |||||| || ||||||||||||| |||||||| ||| ||||| Sbjct 23805 AAAGACGCACAACTGTGAAAGCATTTGCCAAGGATGTTTTAATTAATCA-AGAATGAAAG 23747 Query 312 TTAGGGG 318 || |||| Sbjct 23746 TTGGGGG 23740 >seq38565 Length=91735 Score = 165 bits (182), Expect = 1e-38 Identities = 190/249 (76%), Gaps = 5/249 (2%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCAT 130 || |||||||||| ||||||||||| | |||||| | || || | ||| |||||||| Sbjct 12855 CTGTTACTTTGAAGAAATTAGAGTGCTTAAAGCAAGTCTACACTTTATATAAATTAGCAT 12796 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGT-TTCTAGGACCGCCGTAATGA 189 || || | ||| || | | |||||||| ||| | ||| || | | ||||||| Sbjct 12795 GGGATTGCATTATAAGATTT-CAGTTCTATTACGTTTGCCTTCGAG-ATTGGAGTAATGA 12738 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| ||||| ||||||||| | ||||| || ||||| |||||||||||||||||| Sbjct 12737 TTAACAGGGACAGTCGGGGGCATTTGTATTTCATAGTCAGTGGTGAAATTCTTGGATTTT 12678 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | ||||| ||| ||| ||||||| || ||||| |||||||||||||||| ||| ||| Sbjct 12677 TGAAAGACGAACAACTACGAAAGCATTTGCCAAGTATGTTTTCATTAATCA-AGAATGAA 12619 Query 310 AGTTAGGGG 318 |||| |||| Sbjct 12618 AGTTGGGGG 12610 >seq4574 Length=39985 Score = 152 bits (168), Expect = 9e-35 Identities = 121/144 (84%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 175 GGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTG 234 ||| || ||||||||||| ||| | ||||||||| | ||||| || |||||||||| Sbjct 38360 GGATCGGAGTAATGATTAACAGGTACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTG 38419 Query 235 AAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCAT 294 |||||||||||||||| ||||| ||| ||||||||||| || |||||||||||||||| Sbjct 38420 AAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCAT 38479 Query 295 TAATCAGTGAACGAAAGTTAGGGG 318 |||||| ||||||||||| |||| Sbjct 38480 TAATCA-AGAACGAAAGTTGGGGG 38502 >seq2597 Length=68298 Score = 147 bits (162), Expect = 4e-33 Identities = 138/173 (80%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||||| Sbjct 24989 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGG 25048 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | ||| ||||| ||||| | ||| || ||||||||||| Sbjct 25049 ATAACATTATAGGATTTT-GGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGATTAA 25107 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||||| ||||||||| | ||||| || |||||||||||||||||||||| Sbjct 25108 CAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGAT 25160 >seq12053 Length=7592 Score = 138 bits (152), Expect = 2e-30 Identities = 110/131 (84%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||| || |||||||||||| | ||||| || ||||||||||||||||||||||| Sbjct 2073 GATTAACAGAGATAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATT 2014 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 ||| ||||| ||| ||||||||||| || ||||||||||| ||||||||| ||||| Sbjct 2013 TATGAAAGACGAACAACTGCGAAAGCATTTGTCAAGGATGTTTCCATTAATCA-AGAACG 1955 Query 308 AAAGTTAGGGG 318 |||||| |||| Sbjct 1954 AAAGTTGGGGG 1944 >seq9295 Length=86921 Score = 91.5 bits (100), Expect = 3e-16 Identities = 79/97 (81%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275 |||| || |||||||||||||||||| ||||||| || || ||| |||| |||||| Sbjct 11655 TATTTCATAGTCAGAGGTGAAATTCTTAGATTTATGAAAAACAAACAACTGTGAAAGCAC 11714 Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | |||||| |||||||||||||| |||||||||| Sbjct 11715 TGGACAAGGAGGTTTTCATTAATCA-AGAACGAAAGT 11750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914617347072