Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq31598 96.9 3e-18 seq2009 91.5 1e-16 seq63618 87.8 2e-15 seq63574 84.2 2e-14 seq44995 80.6 3e-13 seq14508 78.8 9e-13 seq18773 75.2 1e-11 seq33605 73.4 4e-11 >seq31598 Length=5730 Score = 96.9 bits (106), Expect = 3e-18 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||| Sbjct 4062 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGA 4003 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| ||||||||||||||| Sbjct 4002 AAGACCATGTATGGGGGTTGACGCCTGCCCAGTGCCGGAAGGTTAA 3957 >seq2009 Length=74205 Score = 91.5 bits (100), Expect = 1e-16 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 69204 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 69145 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||||||||| ||||||| Sbjct 69144 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 69110 >seq63618 Length=155458 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 155300 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 155241 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 155240 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 155195 >seq63574 Length=3088 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| |||| || Sbjct 265 GGTCGCAGTGACCAGGCCCGAGCGACTGTTTACCAAAAACACAGGTCTCCGCAATGTCGT 206 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||||||| |||| ||||||| |||||||||||| || Sbjct 205 AAGACCATGTATAGGGGCTGACACCTGCCCAGTGCCGGAAGGTCAA 160 >seq44995 Length=14328 Score = 80.6 bits (88), Expect = 3e-13 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 611 ATACCAGGGTGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 552 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGC 141 |||||| || |||| |||||||||||| Sbjct 551 GTATAGAGTCTGACACCTGCCCGGTGC 525 >seq14508 Length=424938 Score = 78.8 bits (86), Expect = 9e-13 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||||| ||||||||||| |||||||||| ||| ||||| | ||| | || Sbjct 269782 ACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTTGTAAGACCATGT 269841 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 || ||| |||||||||||| |||||||||||| Sbjct 269842 ATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGT 269874 >seq18773 Length=48831 Score = 75.2 bits (82), Expect = 1e-11 Identities = 74/96 (77%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||||| ||||||||||| |||||||||| ||||||||| | ||| | || Sbjct 22167 ACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCTGCAAAGTCATAAGACCATGT 22108 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 || ||| | |||||||||| ||||| |||||| || Sbjct 22107 ATGGGGGTTAACGCCTGCCCAGTGCCAGAAGGTCAA 22072 >seq33605 Length=15801 Score = 73.4 bits (80), Expect = 4e-11 Identities = 67/85 (79%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| |||||||||| || ||||| || ||| | |||| ||| ||| Sbjct 4539 GCGACTGTTTACCAAAAACACAGGTATCCGCAAAGTCGTAAGACCATGTATGGGGGCTGA 4480 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||| |||||||||||| || Sbjct 4479 CGCCTGCCCAGTGCCGGAAGGTCAA 4455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476505935984