Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq40597 367 2e-99 seq4574 275 1e-71 seq2963 215 8e-54 seq39458 178 2e-42 seq12053 159 6e-37 seq6392 138 2e-30 seq39867 131 3e-28 seq19856 98.7 2e-18 seq13143 82.4 1e-13 seq26413 78.8 1e-12 >seq40597 Length=1900 Score = 367 bits (406), Expect = 2e-99 Identities = 239/259 (92%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 103 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 162 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| |||||||||||||||||||||| Sbjct 163 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCAGC 221 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 222 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 280 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 281 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 340 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 341 AAAGAGCTCTCAATCTGTC 359 >seq4574 Length=39985 Score = 275 bits (304), Expect = 1e-71 Identities = 204/236 (86%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 25 CGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCA 84 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39084 CGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCG 39025 Query 85 TTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC-ATAG-TCGATGGGGC 142 | || ||| | ||||||||||||||||| || | || ||| || || Sbjct 39024 CGGCCTAAAAGGCCGTAGTCCCTCTAAGAAGCTGGCTGCGAAGGGATACCTCCGCATAGC 38965 Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 || |||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 38964 TAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAA 38905 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 38904 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 38849 Score = 145 bits (160), Expect = 1e-32 Identities = 134/167 (80%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62 |||| || | | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39252 CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 39193 Query 63 CTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA 122 ||||||||||||||||||||| | || ||| | ||||||||||||||||| || Sbjct 39192 CTGTTATTGCCTCAAACTTCCGCGGCCTAAAAGGCCGTAGTCCCTCTAAGAAGCTGGCTG 39133 Query 123 CCAA-CCATA-GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTC 167 | || ||| || |||| |||||||| | ||||||||||| Sbjct 39132 CAAAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTC 39086 >seq2963 Length=192782 Score = 215 bits (238), Expect = 8e-54 Identities = 195/243 (80%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77 |||||||| || |||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 33779 AGTGTAGCACGTGTGCGGCCCAGAACATCTAAGGGCATCACAGAGCTGCTATTGCCTCAA 33838 Query 78 ACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC-ATAG-TCG 135 ||||| | || || |||||||| ||| |||| ||| | || ||| || Sbjct 33839 ACTTCTGCAGCCTAAAAAGTCGTAGTCCCTTTAATAAGCTGGCCTCGAAGGGATACCTCT 33898 Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195 ||| |||||||| | ||||||| ||| ||| | |||||||||||| ||||| || Sbjct 33899 GCATAACTAGTTAGCAGGCTGAGGTCTCATTCATTAACAGAATTAACCAGATAAATCGCT 33958 Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 ||||||| | |||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 33959 CCACCAAATCAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCGGTCT 34018 Query 256 GTC 258 ||| Sbjct 34019 GTC 34021 Score = 203 bits (224), Expect = 5e-50 Identities = 191/241 (79%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79 || ||| || || || || ||||||||||| ||||||||| |||| |||||||||||||| Sbjct 23254 TGCAGCACGTGTCCGACCGAGAACATCTAAAGGCATCACAAACCTATTATTGCCTCAAAC 23313 Query 80 TTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC-ATAG-TCGAT 137 ||||| | || ||| | ||||||||||||||||| ||| | || ||| || | Sbjct 23314 TTCCACAGCCTAAAAGGCCTTAGTCCCTCTAAGAAGCTGGCCGCGAAGGGATACCTCCAC 23373 Query 138 GGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCC 197 | || | | ||| | |||||||||| |||| |||||||||||| |||||| |||| Sbjct 23374 ATAGATAGTCATTAGGCTTAGGTCTCGTTTGTTAATGGAATTAACCAGTCAAATCGCTCC 23433 Query 198 ACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 |||||||||||| ||||||||||||||||||||| ||| ||||||||||| | | | ||| Sbjct 23434 ACCAACTAAGAAGGGCCATGCACCACCACCCATAAAATGAAGAAAGAGCTCTTAGTTTGT 23493 Query 258 C 258 | Sbjct 23494 C 23494 Score = 197 bits (218), Expect = 2e-48 Identities = 188/238 (79%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 || ||||||| || ||| || | ||| |||||||||| ||||||||||| |||||||||| Sbjct 11058 TCCGTGTAGCACGTGTGTGGTCGAGACCATCTAAGGGTATCACAGACCTATTATTGCCTC 11117 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC-ATAG-T 133 |||||||| | | ||| | ||||||||||||||||| ||| | || ||| | Sbjct 11118 AAACTTCCGCAGCTTAAAAGGCCGTAGTCCCTCTAAGAAGCTGGCCGCGAAGGGATACCT 11177 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | || |||| ||| | |||||||||| |||| | ||||||| ||||||||| Sbjct 11178 CCGCATAGATAGTTAGTAGGCTGAGGTCTCGTTTGTTAACAAAATTAACTAGACAAATCG 11237 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 |||||||||||||||| | ||||||||||||||| ||||||||||||||| ||| ||| Sbjct 11238 CTCCACCAACTAAGAAGGACCATGCACCACCACCTATAGAATCAAGAAAGTGCTCTCA 11295 >seq39458 Length=3932 Score = 178 bits (196), Expect = 2e-42 Identities = 109/116 (94%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 || |||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 533 TAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAA 474 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 473 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 418 >seq12053 Length=7592 Score = 159 bits (176), Expect = 6e-37 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||||| | |||||| |||||||| || |||||| |||| ||||| |||||| Sbjct 1586 GCTAGTTAGCAGGCTGAGGTCTTGTTCGTTAACGAAATTAATCAGATAAATCGTTCCACC 1645 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 1646 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCACTCTGTC 1703 >seq6392 Length=53742 Score = 138 bits (152), Expect = 2e-30 Identities = 131/164 (80%), Gaps = 10/164 (6%) Strand=Plus/Plus Query 100 TAGTCCCTCTAAGAAGCCAGCCACCA-ACCATAGTCGATGGGGCTATTTAGCAGGTTAAG 158 ||||||||||||||||| ||| | ||| | | | |||| |||| ||| | || Sbjct 48911 TAGTCCCTCTAAGAAGCTGGCCGAGATACCTCTGCCTA----GCTAGTTAGTAGGCTGAG 48966 Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||||||| | |||||||||||||||||| || ||||||||||||||| ||||| Sbjct 48967 GTCTCGTTCGTTAACAGAATTAACCAGACAAATCGCTTCACCAACTAAGAACGACCATGA 49026 Query 219 ACCACCACCC----ATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| |||||| ||||||||||||||||||| | | |||||| Sbjct 49027 ACC-CCACCCATAGATAGAATCAAGAAAGAGCTCTAAGTCTGTC 49069 Score = 116 bits (128), Expect = 6e-24 Identities = 97/118 (82%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||| ||| | |||||| ||||||| |||||||||| ||||||||| || |||| Sbjct 38419 GCTAGTTAGTAGGCTGGGGTCTCATTCGTTAACGGAATTAACGAGACAAATCGCTTCACC 38478 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| ||||| |||||||||||| ||||||||||| | | |||||| Sbjct 38479 AACTAAGAACGACCATG---AACCACCCATAGATATAAGAAAGAGCTCTAAGTCTGTC 38533 >seq39867 Length=6570 Score = 131 bits (144), Expect = 3e-28 Identities = 90/102 (88%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||||| | |||||| ||| | || |||| |||| || |||||||||||||| Sbjct 3481 GCTAGTTAGCAGGCTGAGGTCTTGTTTGCTAACGGACTTAAACAAACAAATCACTCCACA 3422 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAA 242 |||||||||| ||||||||||||||||||||||||||||||| Sbjct 3421 AACTAAGAACAGCCATGCACCACCACCCATAGAATCAAGAAA 3380 >seq19856 Length=31609 Score = 98.7 bits (108), Expect = 2e-18 Identities = 144/207 (70%), Gaps = 39/207 (19%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||||||| |||| | ||||||||| |||||||||||||||| || |||||||| Sbjct 28175 TCAATGTAGCGCCTGTGCAGACCAGAACATATAAGGGCATCACAGACATGCTATTGCCTA 28234 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 ||| |||| ||||||||||| |||| | | || | Sbjct 28235 AAAG---------------GCCA-TAGTCCCTCTATGAAGATGG----------TTGT-G 28267 Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195 ||||| | ||| ||||||| ||| || ||||||||||||| ||||| || Sbjct 28268 ATGGG----------ATGTTGAGGTCTCATTC--TAACGGAATTAACCAGGCAAATTGCT 28315 Query 196 CCACCAACTAAGAACGGCCATGCACCA 222 |||||||||||||| | |||||||||| Sbjct 28316 CCACCAACTAAGAATGACCATGCACCA 28342 >seq13143 Length=33875 Score = 82.4 bits (90), Expect = 1e-13 Identities = 79/101 (78%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT----TATTGCCTC 75 |||| ||||| || || |||||| |||||||||||||||||| |||| ||||||| | Sbjct 14542 TGTAACGCGCATGGGGTCCAGAATATCTAAGGGCATCACAGATCTGTTATATATTGCCGC 14601 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 |||||||| | || | | ||||||||||||||||| Sbjct 14602 AAACTTCCGCAGCCTAAATGGTCGTAGTCCCTCTAAGAAGC 14642 >seq26413 Length=21328 Score = 78.8 bits (86), Expect = 1e-12 Identities = 85/112 (76%), Gaps = 7/112 (6%) Strand=Plus/Minus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||| | | |||| || || |||| | |||||||||||| |||||||| || || || Sbjct 18970 TTAGCAAGATGAGGTTTCATTTGTTAACAAAATTAACCAGACTAATCACTCAACTAATTA 18911 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 ||||| |||| |||||||| ||| || |||||||| ||||| ||| Sbjct 18910 AGAACAATCATG------CACCCATA-AATAAAAAAAGAGCTCTCAATTTGT 18866 Score = 73.4 bits (80), Expect = 6e-11 Identities = 84/112 (75%), Gaps = 7/112 (6%) Strand=Plus/Minus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||| | | |||| || || |||| | |||||||||||| |||||||| || || || Sbjct 19681 TTAGCAAGATGAGGTTTCATTTGTTAACAAAATTAACCAGACTAATCACTCAACTAATTA 19622 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 ||||| |||| |||||||| ||| || | |||||| ||||| ||| Sbjct 19621 AGAACAATCATG------CACCCATA-AATAAAAAGAGAGCTCTCAATTTGT 19577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796308577584