Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq32965 403 3e-110 seq22296 403 3e-110 seq38565 351 2e-94 seq2963 340 3e-91 seq7640 241 2e-61 seq6392 233 3e-59 seq4071 223 6e-56 seq2260 176 8e-42 >seq32965 Length=4567 Score = 403 bits (446), Expect = 3e-110 Identities = 266/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||||||||||||||||||||||| Sbjct 2187 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 2129 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 2128 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 2069 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2068 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 2009 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 2008 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 1949 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | |||| ||| || ||||||||||| |||||||| |||||| |||| |||||| Sbjct 1948 CGAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 1896 >seq22296 Length=45480 Score = 403 bits (446), Expect = 3e-110 Identities = 266/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||||||||||||||||||||||| Sbjct 31495 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 31437 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 31436 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 31377 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 31376 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 31317 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 31316 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 31257 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | |||| ||| || ||||||||||| |||||||| |||||| |||| |||||| Sbjct 31256 CGAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 31204 Score = 347 bits (384), Expect = 2e-93 Identities = 254/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || |||||||||||||| |||||||| ||| ||| Sbjct 32407 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTTAAACTAACTTGTTTCA 32349 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||| ||||||||||| |||||||||||||| |||||||||||||||||| |||| || Sbjct 32348 CGACAGTCTAAACCCAACTCACGTTCCCTATGGGTGGGTGAACAATCCAACACTTAGTGA 32289 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||| |||||| ||||||| ||||| |||||||||||| Sbjct 32288 ATTCTGCTTCATAATGATAGGAAGAGTCGACATTGAAGGATAAAAAAACAACGTCGCTAT 32229 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 32228 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 32169 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | |||| | | || |||||||||| ||||||| ||||| |||||||| ||| Sbjct 32168 CGAATTCCAAAGGTTTAAAGGATCGTTAGGCCATGATTTCACGGTTTGTAATCA 32115 >seq38565 Length=91735 Score = 351 bits (388), Expect = 2e-94 Identities = 253/292 (87%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | | |||||||| |||||||||||||||||| Sbjct 17150 TACTAGGTTGAATTACTATTGCGACACTATTTCTCAGTAGGTTAAAACTAACCTGTCTCA 17209 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||| ||||||||| || | |||||||||||||||||||||||||||||| ||| || Sbjct 17210 TGACAGTCTAAACCTAGTTGTCGTTCCCTATTAGTGGGTGAACAATCCAACACTTGGTGA 17269 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 17270 ATTCTGCTTCACAATGATAGAGAGAGCCGACATCGAAGGATCAAAAAGCAATGTCGCTAT 17329 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| | Sbjct 17330 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAATTTTTCTGACACCTCTAGCTT 17389 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 ||||||||| || ||||||||||| |||||||| |||||| ||||||||| Sbjct 17390 CAAATTTCGGAGGTCTAAAGGATCGTTAGGCCACGCTTTCACAGTTTGTATT 17441 >seq2963 Length=192782 Score = 340 bits (376), Expect = 3e-91 Identities = 252/293 (86%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | |||||| ||| | | || ||||||||||||||||||||||||| |||| Sbjct 31608 TACTAGGTTGAATTATTGTTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTACCTCA 31666 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||| |||||| ||||||||| || ||||||||||||||| ||| || Sbjct 31667 TGACGGTCTAAACCCCGCTCACATTCCCTATTGGTCGGTGAACAATCCAACACTTGGTGA 31726 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| |||||||||||||||||||||||||||||||||||| || | ||||| Sbjct 31727 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCTACATTGCTAT 31786 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||| ||||||||| |||||||||||||||||||||||| |||||||||| | Sbjct 31787 GAACGCTTGGATGCCACAAGGGAGTTATCCCTGTGGTAACTTTTCTAACACCTCTAGCTT 31846 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||| || || ||||||||||| |||||||| ||||||| ||| |||||| Sbjct 31847 GGAATTTTGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCATAGTTCGTATTC 31899 Score = 306 bits (338), Expect = 6e-81 Identities = 239/283 (84%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 11 AATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTA 70 |||||| |||| | || ||||||||||||||||||||||||| ||||| || |||||| Sbjct 15061 AATTACTATTGCAAC-ACTGTCATCAGTAGGGTAAAACTAACCTATCTCACGATGGTCTA 15119 Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 |||||||||||||||||| ||| |||||||||||||||||| ||| ||||| |||||| Sbjct 15120 AACCCAGCTCACGTTCCCAATTGGTGGGTGAACAATCCAACACTTGGTGAATTTTGCTTC 15179 Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 ||||||||||| |||||||||||||||| ||||| ||| ||||| | | |||||| Sbjct 15180 ACAATGATAGGAAGTGCCGACATCGAAGGATAAAAAATAAACTTCGCTCT-ATAGCTTGG 15238 Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250 ||||||||| | |||||||| |||||||||||||||| |||||||||| | ||||| || Sbjct 15239 CTGCCACAAACTAGTTATCCTTGTGGTAACTTTTCTGACACCTCTAGCTTAGAATTTTGA 15298 Query 251 GGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || |||| |||||| ||||||| ||||||||||| ||||| Sbjct 15299 AGGTCTAATGGATCGTTAGGCCATGCTTTCATGGTTCATATTC 15341 Score = 279 bits (308), Expect = 9e-73 Identities = 233/283 (82%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 11 AATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTA 70 |||||| |||| | | || |||||| ||||||||||||||||| ||||| || |||||| Sbjct 19321 AATTACTATTGCGAC-ACTATCATCAATAGGGTAAAACTAACCTATCTCACGATGGTCTA 19379 Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 |||| | ||||||||||||||| |||||||||||||||||| ||| ||||| |||||| Sbjct 19380 AACCTATCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTTTGCTTC 19439 Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 |||||||||||||| ||||||||||||||||||| || | ||||| | |||| | Sbjct 19440 ACAATGATAGGAAGAGCTGACATCGAAGGATCAAAAATAAATTTTGCTAT-ATAGCTTCG 19498 Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250 ||||||||||| |||||| | |||||||||||||||| |||||| ||| | |||| ||| Sbjct 19499 CTGCCACAAGCTAGTTATGCTTGTGGTAACTTTTCTGACACCTCCAGCTTAGAATTCCGA 19558 Query 251 GGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || ||||| |||| |||||||| | |||| | || |||||| Sbjct 19559 AGGTCTAAAAGATCATTAGGCCACGCATTCACGATTCGTATTC 19601 >seq7640 Length=61591 Score = 241 bits (266), Expect = 2e-61 Identities = 224/283 (79%), Gaps = 1/283 (0%) Strand=Plus/Minus Query 11 AATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTA 70 ||||| |||| | | || |||||||||| |||||| |||| ||| ||| ||| ||||| Sbjct 32814 AATTAATATTGCGAC-ACTATCATCAGTAGTGTAAAAGTAACTTGTTTCACGACTGTCTA 32756 Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||||| | ||| ||| |||||| | ||||||||||||| ||| || |||||||| Sbjct 32755 AACCCGGTTCATGTTACCTATTTATAATTGAACAATCCAACACTTGGTCAACTCTGCTTC 32696 Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 |||||||||||| ||||||| ||||||| ||||||||| || ||||||| |||| | Sbjct 32695 ATAATGATAGGAAGATCCGACATTGAAGGATAAAAAAGCAATATCACTATGAATGCTTTG 32636 Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250 ||||||||||||| |||||| |||||||||||||| ||||||| | | ||||| || Sbjct 32635 CTGCCACAAGCCAATTATCCATGTGGTAACTTTTCAAATACCTCTAACTTTGAATTTTGA 32576 Query 251 GGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || |||||| ||| ||||||||||||||| ||| ||||| Sbjct 32575 TGGCATAAAGGTTCGTTAGGCCACACTTTCACCATTTATATTC 32533 >seq6392 Length=53742 Score = 233 bits (258), Expect = 3e-59 Identities = 172/200 (86%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 27 ACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTC 86 || ||||||||||||||||| |||||||| |||| || || |||||| |||||| ||| Sbjct 51241 ACTGTCATCAGTAGGGTAAATCTAACCTGCCTCACAACAGTTTAAACCTGGCTCACATTC 51300 Query 87 CCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 |||||| |||||||||||||||||| ||| ||||||| |||| ||||||||||||| Sbjct 51301 CCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTACTTCACAATGATAGGAAGAG 51360 Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 | ||||||||||||| |||| |||||| |||||||||||||||| |||||||||| || Sbjct 51361 CTGACATCGAAGGATAAAAA---AACGTCTCTATGAACGCTTGGCTTCCACAAGCCATTT 51417 Query 207 ATCCCTGTGGTAACTTTTCT 226 || ||||||||||||||||| Sbjct 51418 ATTCCTGTGGTAACTTTTCT 51437 Score = 219 bits (242), Expect = 7e-55 Identities = 223/293 (76%), Gaps = 27/293 (9%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | | |||||| |||| | | || ||||||||||||||||| |||| |||| Sbjct 40871 TACTAGGTGTAATTACTATTGTGAC-ACTGTCATCAGTAGGGTAAA-----CCTGCCTCA 40924 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 || || |||||| |||||| ||||||||| |||||||| ||||||||| ||| || Sbjct 40925 CAACAGTTTAAACCTTGCTCACATTCCCTATTGGTGGGTGAGCAATCCAACACTTGGTGA 40984 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||| ||||||||||||| |||| |||||| |||| Sbjct 40985 ATTCTGCTTCACAATGATAGGAAGAGTGGACATCGAAGGATAAAAA---AACGTCTCTAT 41041 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||| |||||||||||||||||| |||||| ||||| |||| | Sbjct 41042 GAACACTTGGCTGCCACAAGCCATTTATCCATGTGG------------------TAGCTT 41083 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||||| || || |||||| ||| |||||||| ||| ||| ||| |||||| Sbjct 41084 CCAATTTTGAAGGTCTAAAGCATCATTAGGCCACTCTTCCATAGTTCGTATTC 41136 >seq4071 Length=177812 Score = 223 bits (246), Expect = 6e-56 Identities = 220/280 (79%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 14 TACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAAC 73 ||| |||| | | || |||||||||||| |||||||||| |||||||| | | ||||||| Sbjct 37129 TACTATTGCGAC-ACTGTCATCAGTAGG-TAAAACTAACATGTCTCATAATGATCTAAAC 37072 Query 74 CCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGT 133 ||| ||||| | ||||||| | | |||| | |||||| ||| ||||||| | | Sbjct 37071 CCATCTCACAT-CCCTATTGATTGTTGAAAATTCCAACACTTGGTGAATTCTTCATA--- 37016 Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 ||||||||||||| ||||||||||||| ||||||||| || | |||| |||| |||| Sbjct 37015 ATGATAGGAAGAGTTGACATCGAAGGATAAAAAAGCAATTTCATTCTGAATGCTTAGCTG 36956 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGG 253 |||||||| |||| ||| | |||||||||||| | | | | || |||||||| || || Sbjct 36955 CCACAAGCTAGTTGTCCTTATGGTAACTTTTCCGACCCATTTATTTTCAAATTTTGAAGG 36896 Query 254 ACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| | | ||||||||||||||| |||| |||||| Sbjct 36895 TCTAAAGAACTGTTAGGCCACACTTTCACGGTTCGTATTC 36856 >seq2260 Length=60163 Score = 176 bits (194), Expect = 8e-42 Identities = 146/178 (82%), Gaps = 8/178 (4%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || |||||| ||||||||||||||| || Sbjct 42087 TACTAGGTTGAATTACTATTGCGAC-ACTATCATCAATAGGGTAAAACTAACTTG----- 42140 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||| ||||||| || ||||||||| |||||||| ||| || Sbjct 42141 --ACGGTCTAAACCCAGCTCATGTTCCCTTTTGGTGGGTGAAAAATCCAACACTTGATGA 42198 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 ||||| ||| | || ||||||||||||||||||||||||| |||||||||||||||| Sbjct 42199 ATTCTACTTTGCAATAATAGGAAGAGCCGACATCGAAGGATAAAAAAGCAACGTCGCT 42256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853856054784