Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq63618 107 2e-21 seq11032 107 2e-21 seq2009 107 2e-21 seq31598 105 7e-21 seq63630 104 3e-20 seq33605 98.7 1e-18 seq18700 95.1 1e-17 seq63608 93.3 5e-17 seq19099 84.2 2e-14 seq8848 84.2 2e-14 seq63574 80.6 3e-13 seq63496 80.6 3e-13 seq16139 80.6 3e-13 seq52082 75.2 1e-11 seq45129 75.2 1e-11 seq25054 75.2 1e-11 seq11265 73.4 4e-11 >seq63618 Length=155458 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 154980 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 155039 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 155040 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 155098 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 155099 ACAAGGAATTTCGCTACCTTAGGACCGTTA 155128 >seq11032 Length=8164 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 3776 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 3835 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 3836 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 3894 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 3895 ACAAGGAATTTCGCTACCTTAGGACCGTTA 3924 >seq2009 Length=74205 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 68900 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 68959 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 68960 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 69019 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 69020 GACAAGGAATTTCGCTACCTTAGGACAGTTA 69050 >seq31598 Length=5730 Score = 105 bits (116), Expect = 7e-21 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 3742 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 3801 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 3802 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 3860 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||||||||||||||||||||||||||||| Sbjct 3861 ACAAGGAATTTCGCTACCTTAGGACCGTT 3889 >seq63630 Length=937 Score = 104 bits (114), Expect = 3e-20 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 284 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 225 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | || ||||||| ||| || ||||||| |||| |||||||||| Sbjct 224 C-CTCTCTTCGAGACAGTGCCTAGATCATTACGCCTTTCGTGCGGGTCAAAACTTACCCG 166 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 165 ACAAGGAATTTCGCTACCTTAGGACCGTTA 136 >seq33605 Length=15801 Score = 98.7 bits (108), Expect = 1e-18 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| | | |||||||| || | | ||||||| ||| Sbjct 4240 GGGTCTTTCTGTCCAGGTGCAGGTAGTTCGTATCTTCACAGACATGTCTATTTCACCGAG 4299 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 4300 C-CTCTCTCCGAGACAGTGTCCAGATCATTACGCCTTTCGTGCGGGTCGGAACTTACCCG 4358 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 4359 ACAAGGAATTTCGCTACCTTAGGACCGTTA 4388 >seq18700 Length=4494 Score = 95.1 bits (104), Expect = 1e-17 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||| ||||| || | ||||||| ||| Sbjct 2850 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATTTTCACAGACATGTTTATTTCACCGAG 2909 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 2910 C-CTCTCTCCGAGACAGTGCCCAGATCATTACGCCTTTCGTGCGGGTCGGAACTTACCCG 2968 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||| |||||||||||||||||| Sbjct 2969 ACAAGGAATTTTGCTACCTTAGGACCGTTA 2998 >seq63608 Length=468 Score = 93.3 bits (102), Expect = 5e-17 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 70 TACGCCTTTCGTGCGGGTTGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 11 Query 173 A 173 | Sbjct 10 A 10 >seq19099 Length=32491 Score = 84.2 bits (92), Expect = 2e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || || |||| |||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 10721 TACGCCTTTTGTGCGGGTCGGAACTTACCTGACAAGGAATTTCGCTACCTTAGGAACGTT 10662 Query 173 A 173 | Sbjct 10661 A 10661 >seq8848 Length=272636 Score = 84.2 bits (92), Expect = 2e-14 Identities = 97/132 (73%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 43 GCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTT-GAGACAGN 101 ||||||| || ||||||||| |||| |||||| |||| | | || ||||||| Sbjct 149995 GCGGGTAGTCCACATCTTCACAGATATGTTTATTTCATCGAGC-CTCTCTTCGAGACAGT 150053 Query 102 NNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 161 ||| || ||||||| |||| ||||||||| ||||||||||||| ||||| Sbjct 150054 GCCCAAATCGTTACGCCTTTCGTGCGGGTCAGAACTTACCTGACAAGGAATTTCTCTACC 150113 Query 162 TTAGGACCGTTA 173 |||||| ||||| Sbjct 150114 TTAGGATCGTTA 150125 >seq63574 Length=3088 Score = 80.6 bits (88), Expect = 3e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 171 ||| || || |||| ||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 33 TACGCCTTTTGTGCGGGTCGAAACTTACCCGACAAGGAATTTTGCTACCTTAGGACCGT 91 >seq63496 Length=23938 Score = 80.6 bits (88), Expect = 3e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || ||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||| Sbjct 2215 CCTTTCGTGCGGGTCGGAACTTACCCAACAAGGAATTTTGCTACCTTAGGACCATTA 2271 >seq16139 Length=13770 Score = 80.6 bits (88), Expect = 3e-13 Identities = 107/150 (71%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| ||| || |||| || ||||||||| || | | ||||||| || Sbjct 1849 GGGTCTTTCTATCCAGGTGCAGGTAGTCTGCATCTTCATAGACATGTCTATTTCACCGAC 1790 Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | |||||||| ||| || ||||||| ||||| |||||||||| Sbjct 1789 C-CTCTCTCTGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGAAACTTACCCG 1731 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||| |||||||||||| | ||| Sbjct 1730 ACAAGGAATTTTGCTACCTTAGGAACATTA 1701 >seq52082 Length=1205 Score = 75.2 bits (82), Expect = 1e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| |||| ||||||||||||||||||| || |||||||||||| ||| Sbjct 900 TACGCCTTTCGTGCGGGTCAAAACTTACCCGACAAGGAATGTCACTACCTTAGGACTGTT 959 Query 173 A 173 | Sbjct 960 A 960 >seq45129 Length=2069 Score = 75.2 bits (82), Expect = 1e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||| | ||| ||||||||| ||||||||||| || |||||||||||||||| Sbjct 1585 TACGCCTTTCGTACGGGTTGGAACTTACTCGACAAGGAATGTCACTACCTTAGGACCGTT 1526 Query 173 A 173 | Sbjct 1525 A 1525 >seq25054 Length=11687 Score = 75.2 bits (82), Expect = 1e-11 Identities = 49/54 (91%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 120 TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || |||| ||||| |||| |||| |||||||||||||||||||||||||||||| Sbjct 2461 TTTGTGCGGGTCGAAACTCACCCAACAAGGAATTTCGCTACCTTAGGACCGTTA 2514 >seq11265 Length=143324 Score = 73.4 bits (80), Expect = 4e-11 Identities = 97/136 (71%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 ||||||||| |||| || |||||| |||||||||| || | | ||||||| ||| Sbjct 20404 GGGTCTTTTTGTCCAGGTGCAGGTAATTTGCATCTTCACGGACATGTCTATTTCACCGAG 20463 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||| ||| ||||| |||||| ||| Sbjct 20464 C-CTCTATCCGAGACAGTGGCCAGATCGTTACGCCTTTCATGCGGGTCGAAACTTATCCG 20522 Query 144 ACAAGGAATTTCGCTA 159 |||||||||||||||| Sbjct 20523 ACAAGGAATTTCGCTA 20538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546862517136