Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= AAMG01001210.1 Length=647 Score E Sequences producing significant alignments: (Bits) Value seq21979 399 9e-109 >seq21979 Length=101160 Score = 399 bits (442), Expect = 9e-109 Identities = 318/381 (83%), Gaps = 15/381 (4%) Strand=Plus/Minus Query 276 GCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTATAAGG 335 ||||||||||||||||| ||||||||||| ||||||||| |||||||||| || ||||| Sbjct 97394 GCTCCAAAGAGGAAAAGACCAAGGCAAGTCTTGGAAAATCCTGGAGGATTTAGTGTAAGG 97335 Query 336 AGCAGCCCCATTTCG---------GCTAAAGTGGAGATGGATCAAACAACAATGAAGATG 386 |||||||||||||| |||||||| ||||||||||| |||||||||||| | Sbjct 97334 AGCAGCCCCATTTCATCTTCTACAGCTAAAGTTGAGATGGATCAGACAACAATGAAGCTA 97275 Query 387 GAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTACAGCGGAAAATGGAGTTTCC 446 ||||||| ||| ||||||||||||||||||||||||||| | || |||||||| ||||| Sbjct 97274 GAGGTTTTTTCACCTAATTTGGAGAAGACCCCACAATCTGCTGCTGAAAATGGTGTTTCT 97215 Query 447 TTATATGATTTGGGTGCTTCTGTACAAAGTTTGCCGGTGGTAACAGATCCGGTACCGGAG 506 ||||||||||| ||| ||||| |||||||||||||| ||| |||||||||||||||| Sbjct 97214 TTATATGATTTAAGTGGTTCTGCACAAAGTTTGCCGGCGGTTGTAGATCCGGTACCGGAG 97155 Query 507 CCGATGAAGGTTGAATCTGAGGTCAAGAGGAGGCCTGATGAATCTGAATTTACTATGGAG 566 ||||||||| | |||||||| ||||||||||| |||||||||||||||| |||||| Sbjct 97154 CCGATGAAGATGGAATCTGACCTCAAGAGGAGGTCTGATGAATCTGAATT---TATGGAT 97098 Query 567 AGTAAAGTGGAAGTGAATTCACCTAAGAAGGATACTTCTACTGTTGTTGCAGCGGAGAGT 626 ||||| | |||||||||||| || |||| ||| ||| |||| ||| | || || | | Sbjct 97097 AGTAAGGAGGAAGTGAATTCCCCAAAGAGGGAATCTTTTACT-TTG--GGAGTAGATAAT 97041 Query 627 AGTATTCATGAGGTTGCTGCT 647 ||||||| ||||| || |||| Sbjct 97040 AGTATTCGTGAGGATGTTGCT 97020 Score = 241 bits (266), Expect = 5e-61 Identities = 203/245 (83%), Gaps = 17/245 (7%) Strand=Plus/Minus Query 39 AAGCCACACGGACAAAAAAGGCCACCAGCAAAGTCACCACCTAAAGCTTCTTCATCTAAT 98 ||||| | |||||||| |||| || ||||||||||| |||||||||||||||||||| Sbjct 97736 AAGCCTAATGGACAAAAGCGGCCGCCGGCAAAGTCACCTCCTAAAGCTTCTTCATCTAAC 97677 Query 99 CCTGAAGAGCTGGAGATTGAGATTGCTGAAGTTCTTTTTGGTTTG-------AGTCATCA 151 ||||||||||| ||||||||||||||||||||| | | ||| ||| ||||| || Sbjct 97676 CCTGAAGAGCTTGAGATTGAGATTGCTGAAGTTTTGTATGGATTGATGACTCAGTCA-CA 97618 Query 152 TGGACCTTCCAAAAAAGATACAAGTGTGACAAATGATAATACAAGAGAAGTTAATAATAA 211 |||||||| |||||||| || || ||| || || ||||||||||||| |||||| Sbjct 97617 AGGACCTTCAAAAAAAGA---AAATG-GACCAA--ATGATACAAGAGAAGT---TAATAA 97567 Query 212 CAGATCCAGAGTTTCATCTCCTGTTTCTAATTCTAACTCATCAGCTACTCCTTTATCTGC 271 ||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||| Sbjct 97566 CAGATCCAGAGTTTCATCTCCAGCTTCTAATTCAAACTCATCAGCAACTCCTTTATCTGT 97507 Query 272 TGCTG 276 || || Sbjct 97506 TGTTG 97502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1963510040032