Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq40597 264 1e-68 seq2597 114 1e-23 seq18512 109 6e-22 seq2963 96.9 4e-18 seq38565 73.4 4e-11 >seq40597 Length=1900 Score = 264 bits (292), Expect = 1e-68 Identities = 174/191 (91%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| ||||||||||||| |||||||||||||| | || | |||||||| |||||||||| Sbjct 860 GGAAACAGGACTTTTACTGTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 801 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 800 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 742 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||| Sbjct 741 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 682 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 681 TTGGATTTATT 671 >seq2597 Length=68298 Score = 114 bits (126), Expect = 1e-23 Identities = 132/174 (76%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||||| Sbjct 24989 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGG 25048 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | ||| ||||| || || | ||| || |||||||| | Sbjct 25049 ATAACATTATAGGATTTT-GGTCCTATTACGTTGGCCTTCGGGATCGGA-GTAATGATTA 25106 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | | ||| ||||||||| | ||||| || |||| ||||||||||||||||| Sbjct 25107 ACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGAT 25160 >seq18512 Length=5413 Score = 109 bits (120), Expect = 6e-22 Identities = 135/181 (75%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | ||||||| |||| |||| | | | |||| ||| Sbjct 2963 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCTAGCCTACGCTCTGTAAATATTAGCAT 3022 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | ||| ||||| || || | ||| || ||||||| Sbjct 3023 GGGATAACATTATAGGATTTT-GGTCCTATTACGTTGGCCTTCGGGATCGGA-GTAATGA 3080 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 3081 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 3140 Query 190 T 190 | Sbjct 3141 T 3141 >seq2963 Length=192782 Score = 96.9 bits (106), Expect = 4e-18 Identities = 131/179 (73%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 ||||||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| ||| Sbjct 11793 CTTTTACTTTGAACAAATTAGAGTGCTCAAAGCAAGCCTATGCTCTGTATACATTAGCAT 11734 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | ||| ||||| | || | ||| || |||||| Sbjct 11733 GGGATAAAATTATAGGA-TTTTGGTCCTATTACATTGGCCTTCGGGATCG-AATTAATGA 11676 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 | || | ||| |||| ||| | ||||| || |||| |||||||||| | ||||| Sbjct 11675 TTAACAGGGAATGTCGAGGGCATTCGTATTTCATAGTCAGAGGTGAAATTTATAGATTT 11617 >seq38565 Length=91735 Score = 73.4 bits (80), Expect = 4e-11 Identities = 127/180 (71%), Gaps = 5/180 (3%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGA-ATACATTACCAT 69 || |||||||||| ||||||||| | | |||||| | || || | ||| |||| ||| Sbjct 12855 CTGTTACTTTGAAGAAATTAGAGTGCTTAAAGCAAGTCTACACTTTATATAAATTAGCAT 12796 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGT-TTCTAGGACCGCCCGTAATG 128 || || | ||| || | | |||||||| || | ||| || | |||||| Sbjct 12795 GGGATTGCATTATAAGATTT-CAGTTCTATTACGTTTGCCTTCGAGATTGGA--GTAATG 12739 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | ||| ||||||||| | ||||| || |||| |||||||||||||||||| Sbjct 12738 ATTAACAGGGACAGTCGGGGGCATTTGTATTTCATAGTCAGTGGTGAAATTCTTGGATTT 12679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511684226560