Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq59813 96.9 6e-18 >seq59813 Length=2280 Score = 96.9 bits (106), Expect = 6e-18 Identities = 149/209 (71%), Gaps = 9/209 (4%) Strand=Plus/Minus Query 90 AGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTT 149 ||| |||| | ||| || |||| | || | || ||| || || ||||||||| || Sbjct 2052 AGCGCCGCGATGAACGCCTCTT-GCGGGACCTCGACGCGACCGACCATCTTCATGCGCTT 1994 Query 150 TTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCA 209 || || |||| |||||||| || ||||||||||| ||| | | ||||||||||||||| Sbjct 1993 CTTGCCCTCCTTCTGCTTCTCGAGGAGCTTGCGCTTGCGGGTGATGTCACCGCCGTAGCA 1934 Query 210 TTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGA-GGTC---CGCGCAATGATCTGCC 265 || || || |||| ||| | | ||| |||| | || || || ||||| | Sbjct 1933 CTTCGCGAGGACGTCCTTGCGCATCGCC----CGGATGCTCTCGCGGGCGATGATGCGGG 1878 Query 266 CGCCAATGGCGGCCTGGATCGCGACGTCG 294 | || |||||||||||||||| || ||| Sbjct 1877 CACCGATGGCGGCCTGGATCGGAACCTCG 1849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 837866241024