Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq40597 389 7e-106 seq4574 226 5e-57 seq2963 223 7e-56 seq19856 168 1e-39 seq13143 116 7e-24 seq63483 98.7 2e-18 seq11192 93.3 8e-17 seq512 89.7 1e-15 seq29087 87.8 3e-15 seq45331 82.4 1e-13 seq8310 73.4 7e-11 >seq40597 Length=1900 Score = 389 bits (430), Expect = 7e-106 Identities = 248/269 (92%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | |||||||| | ||| |||||||||| Sbjct 268 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 209 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 208 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 149 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||||||||||||| |||||| ||||| | | ||||| ||| Sbjct 148 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTACTT--CCTTGTCCG 91 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 90 AAAGGTCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 31 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGC 288 |||||||||||||||| |||||||||||| Sbjct 30 CTCTTCAACGAGGAATCCCTAGTAAGCGC 2 >seq4574 Length=39985 Score = 226 bits (250), Expect = 5e-57 Identities = 217/271 (80%), Gaps = 8/271 (3%) Strand=Plus/Plus Query 15 CGAGGGAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGGGTC-GCCGGC 72 || | || |||||||| | |||||||| |||| | || | | | | | ||| || Sbjct 39081 CGCGNGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTTTGCAGCCAGC 39140 Query 73 TTCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||| |||| | | |||| ||||||||||||||||||||||||||| Sbjct 39141 TTCTTAGAGGGACTA-CGGCCTTTTAGGCCGC-GGAAGTTTGAGGCAATAACAGGTCTGT 39198 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| | ||||||| | || Sbjct 39199 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGCTTATA 39258 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | |||||||||| | ||| | |||| |||||||||| |||| Sbjct 39259 GCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTTATGGGGATAGATCATT 39317 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTA 280 |||||| ||| ||||||||||||||| |||| Sbjct 39318 GCAATTGTTGGTCTTCAACGAGGAATTCCTA 39348 Score = 127 bits (140), Expect = 4e-27 Identities = 89/98 (91%), Gaps = 5/98 (5%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAG 123 ||| ||||||||||||||||| |||| | | |||| ||||||||||||||||||||| Sbjct 38989 GCCAGCTTCTTAGAGGGACTA-CGGCCTTTTAGGCCGC-GGAAGTTTGAGGCAATAACAG 39046 Query 124 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCG 161 |||||||||||||||||||||||||||||||||||||| Sbjct 39047 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCG 39084 >seq2963 Length=192782 Score = 223 bits (246), Expect = 7e-56 Identities = 208/261 (80%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCGGCTCAAGCCGATG--GAAGTTTGAGGCAATAACAGG 124 ||| |||| ||| |||||||| || || | || |||||||||||||||| ||| Sbjct 33881 GCCAGCTTATTAAAGGGACTA-CGACTTTTTAGGCTGCAGAAGTTTGAGGCAATAGCAGC 33823 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||| || |||||||| | | | ||||||| Sbjct 33822 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACACGTGCTACACTAATATATTCAACGAGC 33763 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 | || ||||||| | ||| | |||||||||| | ||| | | ||| || ||||||| Sbjct 33762 TTATAGCCTTGGCTGACAGGCCCGGGTAATCTT-TGAAATTTCATTGTGATGAGGATAGA 33704 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||||||| ||||||| ||||||| |||||||||||| ||||||| | | | Sbjct 33703 TCATTGCAATTATTGGTCTTCAATGAGGAATTCCTAGTAAGCGCAAGTCATCAACTCACA 33644 Query 305 TTGATTACGTCCCTGCCCTTT 325 |||| ||||||| |||||||| Sbjct 33643 TTGACTACGTCCATGCCCTTT 33623 Score = 206 bits (228), Expect = 5e-51 Identities = 205/263 (78%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGT 125 ||| ||||||||||||||||| | || || | ||||||||||||||||||| |||| Sbjct 23354 GCCAGCTTCTTAGAGGGACTAAGGCCTTTTAGGCTGTGGAAGTTTGAGGCAATAATAGGT 23295 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 ||||||||| ||||||||||| || || || || ||| || || | ||||||| | Sbjct 23294 TTGTGATGCCTTTAGATGTTCTCGGTCGGACACGTGCTGCATGGATGTATTCAACGAGCT 23235 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 || ||||||| | | | || ||||||||| | ||| | | ||| |||||||||| Sbjct 23234 TATAGCCTTGGCTGACAAGCCTAGGTAATCTT-TGAAATTTCATAGTGTTGGGGATAGAT 23176 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||| ||| ||||||| ||||||| |||| |||||||| || |||||| ||| | Sbjct 23175 CATTGCAATTGTTGGTCTTCAATGAGGAATACCTATTAAGCGCGAGTGATCAGCTCGCAT 23116 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| || ||| ||||||||||| Sbjct 23115 TGACTATGTCTATGCCCTTTGTA 23093 Score = 111 bits (122), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 5/136 (4%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAG 123 ||| ||||||||||||||||| |||| | |||| | |||||||||||||||||| || Sbjct 11162 GCCAGCTTCTTAGAGGGACTA-CGGCCTTTTAAGCTGC-GGAAGTTTGAGGCAATAATAG 11105 Query 124 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG 183 ||||||||| |||||||||| ||| | || ||| || ||||||| || | |||| || Sbjct 11104 GTCTGTGATACCCTTAGATGGTCTCGACCACACACGTGCTACACGGATGTATTCAACAAG 11045 Query 184 TTCATCACCTTGGCCG 199 | || ||||||||| Sbjct 11044 CTTATAGCCTTGGCCG 11029 >seq19856 Length=31609 Score = 168 bits (186), Expect = 1e-39 Identities = 170/220 (77%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 108 TTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACAC 167 ||| |||||||| || |||||||||||||||| ||||||||| | |||| |||||||| Sbjct 28237 TTTTAGGCAATAGCATGTCTGTGATGCCCTTATATGTTCTGGTCTGCACAGGCGCTACAT 28178 Query 168 TGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT 227 ||| | || |||| || |||||| | || |||||||| || | ||| | Sbjct 28177 TGATGTATTAAATGAGTATATAGCCTTGGTTGACTGGAGTGGGTAATATT-TGAAATTTC 28119 Query 228 GTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287 ||||| |||||||| | |||||||||| ||| ||||||||||||||| |||| |||||| Sbjct 28118 ATCGTGATGGGGATATATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAATAAGCG 28059 Query 288 CGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 || ||||||| | | |||| ||| |||||||| ||||| Sbjct 28058 CGAGTCATCATCTCATATTGACTACATCCCTGCCTTTTGT 28019 >seq13143 Length=33875 Score = 116 bits (128), Expect = 7e-24 Identities = 159/218 (73%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATA----ACAGG 124 ||||||||||||||||| || | | || | ||||||||| ||||||| |||| Sbjct 14642 GCTTCTTAGAGGGACTA-CGACCATTTAGGCTGCGGAAGTTTGCGGCAATATATAACAGA 14584 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||| |||||| || || ||||| |||| | | | |||| ||| Sbjct 14583 TCTGTGATGCCCTTAGATATTCTGGACCCCATGCGCGTTACATTAATGTATTCAACAAGT 14524 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 | || |||| || | ||| || |||| || | ||| | ||||| ||| |||||| Sbjct 14523 TTATAGTCTTGATCGACACGTCCGGATAAT-TTTTGAAATTTCATCGTGATGGAGATAGA 14465 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGT 282 |||| |||| ||| | |||||| | |||| | |||| Sbjct 14464 TCATTAAAATTGTTGGTTTTCAACAAAGAATTCTTAGT 14427 >seq63483 Length=21411 Score = 98.7 bits (108), Expect = 2e-18 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 ||| |||| |||||||||| ||||||||||||| ||||||||| ||||||| ||||||| Sbjct 9280 TTGGTCTTTAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTTGCGTTGACTACGTCC 9339 Query 317 CTGCCCTTTGTA 328 |||||||||||| Sbjct 9340 CTGCCCTTTGTA 9351 >seq11192 Length=26670 Score = 93.3 bits (102), Expect = 8e-17 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| ||||||| ||||||| ||||||||||||| ||||||||| || |||| ||| Sbjct 6651 ATTGTTGGTCTTCAATGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTTGCATTGACTAC 6710 Query 313 GTCCCTGCCCTTTGTA 328 ||||||| |||||||| Sbjct 6711 GTCCCTGTCCTTTGTA 6726 >seq512 Length=109893 Score = 89.7 bits (98), Expect = 1e-15 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 ||| ||||||||||||||| ||||||||| ||| ||||| ||| |||||||| ||||||| Sbjct 15210 TTGGTCTTCAACGAGGAATTCCTAGTAAGTGCGAGTCATTAGCTCGCGTTGACTACGTCC 15151 Query 317 CTGCCCTTTGTA 328 | ||||||||| Sbjct 15150 TTTCCCTTTGTA 15139 >seq29087 Length=19738 Score = 87.8 bits (96), Expect = 3e-15 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| ||||||| ||||||| ||||||||||| | ||||||||| ||| |||| ||| Sbjct 5630 ATTGTTGGTCTTCAATGAGGAATTCCTAGTAAGCGTGAGTCATCAGCTCGCATTGACTAC 5689 Query 313 GTCCCTGCCCTTTGTA 328 |||||| |||||||| Sbjct 5690 GTCCCTATCCTTTGTA 5705 >seq45331 Length=95177 Score = 82.4 bits (90), Expect = 1e-13 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 241 TAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCA 300 |||| ||||| |||| ||| ||||||||||||||| |||||||| || |||||| | Sbjct 3738 TAGATCATTGTAATTTTTGGTCTTCAACGAGGAATTTTTAGTAAGCACGACTCATCAACT 3679 Query 301 CGCGTTGATTACGTCCCTGCCCTTTGTA 328 || |||||||||| | || |||||||| Sbjct 3678 TGCTTTGATTACGTTCTTGTCCTTTGTA 3651 >seq8310 Length=118339 Score = 73.4 bits (80), Expect = 7e-11 Identities = 54/63 (86%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 ||| ||||||||||||||| |||||||| |||| ||||| || ||| |||||||||||| Sbjct 17945 TTGGTCTTCAACGAGGAATTCCTAGTAAACGCGAGTCATTAGTTCGCATTGATTACGTCC 18004 Query 317 CTG 319 || Sbjct 18005 TTG 18007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946596974592