Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq63652 122 2e-25 seq17305 122 2e-25 seq63648 116 8e-24 seq63586 114 3e-23 seq63615 113 1e-22 seq21716 111 3e-22 seq15855 105 1e-20 seq22164 104 5e-20 seq1748 100 6e-19 seq63621 89.7 1e-15 seq63611 87.8 4e-15 >seq63652 Length=3795 Score = 122 bits (134), Expect = 2e-25 Identities = 147/199 (74%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| |||| |||| | ||||| ||| ||||| | | ||| |||| || Sbjct 13 AAAAGAAGTTCACAACCCGTGGG-CCTTCTACCTCCACGCGGCATTGCTCTGTCAGGCTT 71 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 | | |||||| || ||||| |||||||||||||||||||||| ||| ||||||||||| Sbjct 72 TTGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 131 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 132 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 191 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 192 GCCTCACCAACTAGCTAAT 210 >seq17305 Length=6328 Score = 122 bits (134), Expect = 2e-25 Identities = 147/199 (74%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||||| ||| ||||| | | ||| |||| || Sbjct 1957 AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTT 2015 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||||||||||| ||| ||||||||||| Sbjct 2016 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 2075 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 2076 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 2135 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 2136 GCCTCACCAACTAGCTAAT 2154 >seq63648 Length=2714 Score = 116 bits (128), Expect = 8e-24 Identities = 146/199 (73%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||||| ||| ||||| | | ||| |||| || Sbjct 821 AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTT 763 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||||||||||| ||| || |||||||| Sbjct 762 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCATGTCTCAG 703 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| || || ||| || || Sbjct 702 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATAACCTTGGTAAGCTATT 643 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 642 GCCTCACCAACTAGCTAAT 624 >seq63586 Length=2304 Score = 114 bits (126), Expect = 3e-23 Identities = 192/279 (69%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 1112 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 1064 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | | |||| ||||| || | |||| | ||||| ||| ||||| Sbjct 1063 GC------TTCTTCTCCAAGAAAATAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 1011 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || || |||||| || ||||| |||| ||||||||||||| Sbjct 1010 GGTATTGCTCCGTCAGGCTTTCACCCATTGCGAAAAATTCCCCACTACTGCCTCCCGTAG 951 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||||||| |||||||||||| ||||||||| || | || |||| || | ||| || Sbjct 950 GAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATCTTCTCGGACCAGCTACTGAT 891 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 890 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 852 >seq63615 Length=6963 Score = 113 bits (124), Expect = 1e-22 Identities = 145/199 (73%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | | || | ||| |||| | | ||| |||| || Sbjct 2364 AAAAGAAGTTCACGACCCGTGGGCCTTTTA-CCTCTACGCGGCATTGCTCCGTCAGGCTT 2422 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||||||||||||||| |||||| |||| Sbjct 2423 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTTTCAG 2482 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 2483 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 2542 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 2543 GCCTCACCAACTAGCTAAT 2561 >seq21716 Length=6299 Score = 111 bits (122), Expect = 3e-22 Identities = 146/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGT-TCAGACT 139 |||||||||| || | || | | ||||| ||| ||||| | | ||| |||| || Sbjct 3208 AAAAGAAGTTCACGACCCATGGG-CCTTCTACCTCCACGCGGCATTGCTCCCGTCAGGCT 3266 Query 140 CTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCA 199 ||| |||||| || ||||| |||||||||||||||||||||| ||| |||||||||| Sbjct 3267 TTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCA 3326 Query 200 GTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGT 259 || ||| ||||| || | ||||||| || | ||| ||| | | || ||| || | Sbjct 3327 GTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTAT 3386 Query 260 TACCCCGCCTACTACCTAAT 279 | || | || |||| ||||| Sbjct 3387 TGCCTCACCAACTAGCTAAT 3406 >seq15855 Length=5166 Score = 105 bits (116), Expect = 1e-20 Identities = 113/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 ||||||||||||| | || | | ||||| ||| ||||| | | ||| ||| || Sbjct 5059 AAAAGAAGTTTACGACCCATGGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCAAGCTT 5001 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| ||||||| |||||||||||||| ||| ||||||||||| Sbjct 5000 TCGCCCATTGCGGAAAATTCCCCACTGCTACCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 4941 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGA 228 | ||| ||||| || | ||||||| || Sbjct 4940 TCCCAGTGTGGTTGATCATCCTCTCGGA 4913 >seq22164 Length=135635 Score = 104 bits (114), Expect = 5e-20 Identities = 143/199 (72%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 ||||||| || || | |||||| ||||| || || || || | ||| |||| || Sbjct 22036 AAAAGAAATTCACGACCCGTAGG-CCTTCTATCTCCATGCGACATTGCTCCATCAGGCTT 21978 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| ||||||| |||||||||||||||||| |||||||||| Sbjct 21977 TCGCCCATTGTGGAAAATTCCCCACTGCTACCTCCCGTAGGAGTTTGGGTCGTGTCTCAG 21918 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | | ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 21917 TCATAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 21858 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 21857 GCCTCACCAACTAGCTAAT 21839 >seq1748 Length=29097 Score = 100 bits (110), Expect = 6e-19 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 135 AGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTG 194 || || ||| |||||| || ||||| |||||||||||||||||||||| ||| ||||| Sbjct 11760 AGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 11701 Query 195 TCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGG 254 ||||||| ||| ||||| || | ||||||| || | ||| ||| | | || ||| Sbjct 11700 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAA 11641 Query 255 GCCGTTACCCCGCCTACTACCTAAT 279 || || || | || |||| ||||| Sbjct 11640 GCTATTGCCTCACCAACTAGCTAAT 11616 Score = 75.2 bits (82), Expect = 2e-11 Identities = 100/139 (72%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 |||||||||| || |||| |||| || |||| | ||||||| | | ||||||||||| Sbjct 8589 TCGTCCATTGCGAAAAATTCTCCACTACTACCTCTCATAGGAGTCTAGGCCGTGTCTCAG 8530 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| |||| || | |||||||||| | ||| ||| | | || ||| ||| || Sbjct 8529 TCCCAGTGTGACTGATCATCCTCTCAGACCAGCTACTGATCATCGCCTTGGTAGGCTATT 8470 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| |||| Sbjct 8469 GCCTCACCAACTAGTTAAT 8451 >seq63621 Length=23796 Score = 89.7 bits (98), Expect = 1e-15 Identities = 140/199 (70%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | | || | |||||| | | | ||| |||| || Sbjct 23533 AAAAGAAGTTCACGACCCGTGGGCCTTTTA-CCTTCATGTGGCATTGCTCTGTCAGGCTT 23591 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||| ||||||||| | | |||||||||| Sbjct 23592 TCGCCCATTGCAGAAAATTCCCCACTGCTGCCTCTCGTAGGAGTCTAGGCCGTGTCTCAA 23651 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | | ||||| || | |||||||| | | |||| ||| | | || ||| | || Sbjct 23652 TCGTAGTGTGGCTGATCATCCTCTCAAACCAGCTATTGATCATCGCCTTGGTAAACTATT 23711 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 23712 GCCTCACCAACTAGCTAAT 23730 >seq63611 Length=24960 Score = 87.8 bits (96), Expect = 4e-15 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||| | | | ||||| || | | ||| |||||| |||| ||||| || Sbjct 22054 CCTTCTTCACTCACACGATATTGCTGGATCGGGTTTTCGCCCATTGTCCAAGATTCCCCA 22113 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || ||||||||||| ||| | ||| || | ||| Sbjct 22114 CTGCTGCCCCCCGTGGGAGTCCGGGTCGTGTCTCAGTCCCAGTATGGCTGATCATCCGAA 22173 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 | | | ||| |||| | | || ||| ||| ||||| || |||||||||| || Sbjct 22174 AATACCAACTAAGCATCATTGCCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 22233 Query 285 GCATCCCCATC 295 ||| | |||| Sbjct 22234 GCAGGCTCATC 22244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068119559168