Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq32965 111 3e-22 seq22296 111 3e-22 seq41569 86.0 1e-14 seq38565 84.2 4e-14 seq2963 84.2 4e-14 seq2260 75.2 2e-11 seq37477 73.4 6e-11 >seq32965 Length=4567 Score = 111 bits (122), Expect = 3e-22 Identities = 100/123 (81%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 2185 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 2242 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | |||||||||||| |||||||||||||||||||||||| || | Sbjct 2243 GGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2302 Query 121 GAA 123 ||| Sbjct 2303 GAA 2305 >seq22296 Length=45480 Score = 111 bits (122), Expect = 3e-22 Identities = 100/123 (81%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 31493 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 31550 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | |||||||||||| |||||||||||||||||||||||| || | Sbjct 31551 GGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 31610 Query 121 GAA 123 ||| Sbjct 31611 GAA 31613 >seq41569 Length=3194 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| |||||| | ||||||| | || || | | || |||| Sbjct 193 GTACGAGAGGAACCGTT-AATTCACAC-AATTGGTCATCGCACTTGGTTAAAAAGCCAGT 250 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||| | | ||||| |||||| ||||| |||||||||||||||||| Sbjct 251 GGCGCGAAGCTATCGTGTGCTGAATTATGACTGAATGCCTCTAAGTCAGAATCC 304 >seq38565 Length=91735 Score = 84.2 bits (92), Expect = 4e-14 Identities = 88/113 (78%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || ||| Sbjct 17152 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGC 17095 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 ||| |||||||| | || ||||||||| |||||| |||||||||||||||| Sbjct 17094 AGCGCAAAGCTACCGTGTGTTGGATTATGACTGAACACCTCTAAGTCAGAATC 17042 >seq2963 Length=192782 Score = 84.2 bits (92), Expect = 4e-14 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||| | || |||| | |||||| | | ||| || ||| || |||| Sbjct 15053 GTAAGAGAGGAATCATTGA-TTCACA-TAATTGTTCATCGCGCTTGGTTGAAAAGCCAGT 14996 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | |||||||||||| | ||||||||| ||||||||| |||||||||||||| || | Sbjct 14995 GGCACGAAGCTACCATGTATTGGATTATGAATGAACGCCTATAAGTCAGAATCCAGGCAA 14936 Query 121 GAA 123 ||| Sbjct 14935 GAA 14933 Score = 80.6 bits (88), Expect = 4e-13 Identities = 87/113 (77%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| || |||| | ||||| || | ||| || ||| || |||| Sbjct 19313 GTAAGAGAGGAACCGTTGA-TTCACA-TAATTTGTCATCGCGCTTGGTTGAAAAGCCAGT 19256 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | | |||||||||| | ||||||||||| ||||| |||||||| ||||||| Sbjct 19255 GGCACGAAGCTACCGTGTGCTGGATTATAAATGAACACCTCTAAGACAGAATC 19203 Score = 75.2 bits (82), Expect = 2e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 58 AGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATG 117 |||| || ||||||||| | |||||||||||| ||||| |||||||||| ||||||| | Sbjct 31555 AGTGACGTGAAGCTACCGTGTGCTGGATTATGACTGAATGCCTCTAAGTTAGAATCCGAG 31496 Query 118 CCAGAA 123 | |||| Sbjct 31495 CTAGAA 31490 >seq2260 Length=60163 Score = 75.2 bits (82), Expect = 2e-11 Identities = 90/120 (75%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 4 CGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCC 63 ||||||||||| || |||| | ||||| | | ||| || ||| || |||| Sbjct 42084 CGAGAGGAACCATTGA-TTCACAC-AATTGATCATCGCGTTTGGTTGAAAAGCAAGTGGG 42027 Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123 ||||||||||| | |||||||||||| || || |||| ||||||||||||| || |||| Sbjct 42026 GCGAAGCTACCGTTTGCTGGATTATGACTTAATGCCTTTAAGTCAGAATCCGGGCTAGAA 41967 >seq37477 Length=6780 Score = 73.4 bits (80), Expect = 6e-11 Identities = 69/87 (79%), Gaps = 7/87 (8%) Strand=Plus/Plus Query 28 TAATTG--GTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGAT 85 |||||| ||||||| || ||| || ||||| | ||||||||| | |||||||| Sbjct 3829 TAATTGTTGTTTTTG-----GTTTGAAAAGCCAGTGGCATGAAGCTACCGTGTGCTGGAT 3883 Query 86 TATGGCTGAACGCCTCTAAGTCAGAAT 112 |||| |||||||||||||||||| ||| Sbjct 3884 TATGACTGAACGCCTCTAAGTCAAAAT 3910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818694762496