Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq63531 172 1e-38 >seq63531 Length=42858 Score = 172 bits (190), Expect = 1e-38 Identities = 485/739 (66%), Gaps = 13/739 (2%) Strand=Plus/Minus Query 37709 GACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAA 37768 ||||| || ||| |||||||| ||||||| |||||||||| | || | Sbjct 32434 GACCGCACCGGCACCGGCACGCGCAGCCTGTTCGGTGCGCAGCTCCGCTACGACCTGTCG 32375 Query 37769 GATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTG 37828 | || || |||||| | || || || |||| || || || || || ||| Sbjct 32374 AAGGGCTTCCCGCTCATCACGACCAAGCGCGTGCACTTCAAGTCGGTCGCGTACGAGCTG 32315 Query 37829 CTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATT 37888 || ||||| | ||||| |||| ||||| |||||||| | ||||| || Sbjct 32314 CTGTGGTTCCTCCGCGGCGACGGCAACGCCCGCTGGCTGCAGGAGCACGGCGTCCGCATC 32255 Query 37889 TGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGC 37948 ||| | |||||||||||||| ||||||| ||||||||| | ||||||| ||| ||||| Sbjct 32254 TGGAACGAGTGGGCGGACGAGGACGGCGACCTCGGCCCGGTGTACGGCGTGCAGTGGCGT 32195 Query 37949 TCGTGGAAGGGAGCAGACGGGAAAAC-CATCGACCAGATCGCATGGGTTGTCGAAGAGAT 38007 |||||| | | | |||| | | ||||||||||||||| ||| |||| |||| Sbjct 32194 TCGTGG-CCGACCCCGTCGGGCGAGCACATCGACCAGATCGCCCAGGTCATCGAGCAGAT 32136 Query 38008 CAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAATTGGA 38067 | || ||| | || |||||||| | || || ||||| || || || || Sbjct 32135 CCGGACCAACCCGGACTCCCGCCGGCTCATCGTCTCGGCGTGGAACGTCGCCGAGGTGCC 32076 Query 38068 CGAGATGAAGCTGCCGCCGTGTCATTACGC---CTTTCAGTTCTATGTCGCCAACGGCCG 38124 ||||||| |||| | ||||| | |||| ||| |||||| | ||| | ||||| Sbjct 32075 CGAGATGGCGCTGGCCCCGTGCC---ACGCGTTCTTCCAGTTCCACGTCAACGACGGCAA 32019 Query 38125 GTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTTAACAT 38184 | | || ||| | | | ||||| || || | ||| | || | ||||| ||||| Sbjct 32018 GCTCTCGTGCCAGCTGTACCAGCGGAGCGCGGACATGTTCCTCGGTGTCCCGTTCAACAT 31959 Query 38185 CGCGAGCTACGCGCTGTTGACGCATATGGTAGCCCAACAATGCGACTTGGATGTCGGTGA 38244 ||| ||||||||| |||| || ||| | || || || | || ||||| || Sbjct 31958 CGCCTCGTACGCGCTGCTGACCCACATGATCGCGGCGCAGACCGGGCTCGAGGTCGGCGA 31899 Query 38245 ACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACT 38304 || | | ||||| |||||| ||| | ||| | || || | || || | | Sbjct 31898 CTTCGTGTGGACCGGTGGCGACTGCCACGTCTACGACAACCACGTCGAGCAGGTCGAGGA 31839 Query 38305 GCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTTGTGCTGAAACGGAAGCCGC-CGT 38363 ||||||||||||| |||| | |||| |||| ||| | ||| || | |||| | Sbjct 31838 GCAGCTGACGCGCACGCCGTACGCGCTCCCGACGCTCGAGCT----CGCACCCCGCGACT 31783 Query 38364 CTATCTTTGACTATGAATACGACGACTTTGAAATCGTCGGCTACGATCCGCATCCGGCGA 38423 | ||| ||||| || ||||| ||||| ||||||||||| | | || ||||||| Sbjct 31782 CGATCGACGACTACGAGTACGAGGACTTCACCGTCGTCGGCTACCACCACCACCCGGCGA 31723 Query 38424 TTAAAGCACCGGTGGCGGT 38442 | || || |||| || || Sbjct 31722 TCAAGGCCGCGGTCGCCGT 31704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130541234853600