Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_009552.2
Length=40863
Score E
Sequences producing significant alignments: (Bits) Value
seq63531 172 1e-38
>seq63531
Length=42858
Score = 172 bits (190), Expect = 1e-38
Identities = 485/739 (66%), Gaps = 13/739 (2%)
Strand=Plus/Minus
Query 37709 GACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAA 37768
||||| || ||| |||||||| ||||||| |||||||||| | || |
Sbjct 32434 GACCGCACCGGCACCGGCACGCGCAGCCTGTTCGGTGCGCAGCTCCGCTACGACCTGTCG 32375
Query 37769 GATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTG 37828
| || || |||||| | || || || |||| || || || || || |||
Sbjct 32374 AAGGGCTTCCCGCTCATCACGACCAAGCGCGTGCACTTCAAGTCGGTCGCGTACGAGCTG 32315
Query 37829 CTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATT 37888
|| ||||| | ||||| |||| ||||| |||||||| | ||||| ||
Sbjct 32314 CTGTGGTTCCTCCGCGGCGACGGCAACGCCCGCTGGCTGCAGGAGCACGGCGTCCGCATC 32255
Query 37889 TGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGC 37948
||| | |||||||||||||| ||||||| ||||||||| | ||||||| ||| |||||
Sbjct 32254 TGGAACGAGTGGGCGGACGAGGACGGCGACCTCGGCCCGGTGTACGGCGTGCAGTGGCGT 32195
Query 37949 TCGTGGAAGGGAGCAGACGGGAAAAC-CATCGACCAGATCGCATGGGTTGTCGAAGAGAT 38007
|||||| | | | |||| | | ||||||||||||||| ||| |||| ||||
Sbjct 32194 TCGTGG-CCGACCCCGTCGGGCGAGCACATCGACCAGATCGCCCAGGTCATCGAGCAGAT 32136
Query 38008 CAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAATTGGA 38067
| || ||| | || |||||||| | || || ||||| || || || ||
Sbjct 32135 CCGGACCAACCCGGACTCCCGCCGGCTCATCGTCTCGGCGTGGAACGTCGCCGAGGTGCC 32076
Query 38068 CGAGATGAAGCTGCCGCCGTGTCATTACGC---CTTTCAGTTCTATGTCGCCAACGGCCG 38124
||||||| |||| | ||||| | |||| ||| |||||| | ||| | |||||
Sbjct 32075 CGAGATGGCGCTGGCCCCGTGCC---ACGCGTTCTTCCAGTTCCACGTCAACGACGGCAA 32019
Query 38125 GTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTTAACAT 38184
| | || ||| | | | ||||| || || | ||| | || | ||||| |||||
Sbjct 32018 GCTCTCGTGCCAGCTGTACCAGCGGAGCGCGGACATGTTCCTCGGTGTCCCGTTCAACAT 31959
Query 38185 CGCGAGCTACGCGCTGTTGACGCATATGGTAGCCCAACAATGCGACTTGGATGTCGGTGA 38244
||| ||||||||| |||| || ||| | || || || | || ||||| ||
Sbjct 31958 CGCCTCGTACGCGCTGCTGACCCACATGATCGCGGCGCAGACCGGGCTCGAGGTCGGCGA 31899
Query 38245 ACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACT 38304
|| | | ||||| |||||| ||| | ||| | || || | || || | |
Sbjct 31898 CTTCGTGTGGACCGGTGGCGACTGCCACGTCTACGACAACCACGTCGAGCAGGTCGAGGA 31839
Query 38305 GCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTTGTGCTGAAACGGAAGCCGC-CGT 38363
||||||||||||| |||| | |||| |||| ||| | ||| || | |||| |
Sbjct 31838 GCAGCTGACGCGCACGCCGTACGCGCTCCCGACGCTCGAGCT----CGCACCCCGCGACT 31783
Query 38364 CTATCTTTGACTATGAATACGACGACTTTGAAATCGTCGGCTACGATCCGCATCCGGCGA 38423
| ||| ||||| || ||||| ||||| ||||||||||| | | || |||||||
Sbjct 31782 CGATCGACGACTACGAGTACGAGGACTTCACCGTCGTCGGCTACCACCACCACCCGGCGA 31723
Query 38424 TTAAAGCACCGGTGGCGGT 38442
| || || |||| || ||
Sbjct 31722 TCAAGGCCGCGGTCGCCGT 31704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 130541234853600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |