Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6171 194 1e-44 >seq6171 Length=36435 Score = 194 bits (214), Expect = 1e-44 Identities = 580/883 (66%), Gaps = 14/883 (2%) Strand=Plus/Plus Query 61053 TCGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGG 61111 ||| ||| |||| |||||| || ||||| | |||||| |||||||| || || Sbjct 4381 TCGATTCTGTAT-GTTCCCAATTCAGTATCCACAGATTTGGGAAATGTACAAGAAAGCCA 4439 Query 61112 AAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC 61171 || || ||||||||||| || || |||||| | || || | | ||||||| Sbjct 4440 TGGCATCTTTCTGGACGGTAGAAGAAGTCGATCTATCTTCTGATAATCGTCACTGGGAAA 4499 Query 61172 GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGG 61231 || | ||||||| ||||||||| | |||||| | || || |||||||| || | Sbjct 4500 ACCTAACATCCGGTGAAAGACATTTCATCACTCATGTGCTTGCCTTTTTTGCCGCCTCAG 4559 Query 61232 ACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGG 61291 |||| ||||| ||||| | | | | ||| | | || || || || | |||| Sbjct 4560 ACGGCATCGTTTTAGAGAACCTCGCAGGAAGGTTCATGAAAGACGTCCAGGTTGCTGAGG 4619 Query 61292 CGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTG 61351 ||||| |||||| || ||||| || ||||| |||||| |||| || |||||||||||| Sbjct 4620 CGCGTGCTTTCTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGTT 4679 Query 61352 TTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATC 61410 | || | || ||||||| | ||| | | || || | | | ||||||| ||| ||| Sbjct 4680 TGCTGTTGGAGTCGTACATAAAGGATTCTGACGAAAAGAGCA-AATTGTTCCGTGCAATC 4738 Query 61411 GAGACGATACC-GGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTAC 61469 ||||| || || | | |||| ||| ||| | |||||| | ||||||| || Sbjct 4739 GAGACCATCCCTTGTGTTGAA-AAGAAGGCGAAATGGGCCCTTCGTTGGATCGATGGT-- 4795 Query 61470 AACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAG 61529 | | || || | || || ||| |||| ||||| || || || | || ||||| Sbjct 4796 -TCCGAAACTTTCGCGGAGCGCTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCAG 4854 Query 61530 TGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTT 61589 ||| || | || ||||||||||| ||||| || | ||||| || | ||||| Sbjct 4855 CGGAAGCTTCTGTTCGATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACCTT 4914 Query 61590 CAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATT 61649 | |||||||| || ||| | ||||| || |||| ||||||||||| |||||| | Sbjct 4915 CTCAAATGAGTTAATTTCAAGAGACGAAGGTTTGCACTGTGATTTTGCGTGTTTGCTTTA 4974 Query 61650 CAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGC 61709 || | | || || | | |||||||| || | | ||| || || || Sbjct 4975 CA---GTTTGCTAAGGACGAAGCTAACTGAGGAGCGAGTCAGGGGAATTATTGCAGATGC 5031 Query 61710 GGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAA 61769 || || ||| ||| || || ||| ||| | || | || | || ||||| Sbjct 5032 TGTGGAGATAGAAAGGGAGTTCGTGTGTGATGCTCTTCCTTGTGCTCTGGTGGGGATGAA 5091 Query 61770 TTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGG 61829 | | | | ||| | || || |||||||| || || | |||||| | |||||| Sbjct 5092 TGGAGATTTGATGAGTAAATACATAGAATTTGTCGCTGATAGATTGTTGGATGCTTTGGG 5151 Query 61830 -TATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGG 61888 |||| | ||| || ||| | | || |||||||||| ||||| ||||| || Sbjct 5152 TTATG-ACAAGATGTACAATGCTCAGAATCCATTTGATTGGATGGAGCTGATTAGCCTAC 5210 Query 61889 ATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 | || ||||| ||||| || ||||| | || || || ||||| Sbjct 5211 AAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCA 5253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397259525000960