Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq6171 194 1e-44
>seq6171
Length=36435
Score = 194 bits (214), Expect = 1e-44
Identities = 580/883 (66%), Gaps = 14/883 (2%)
Strand=Plus/Plus
Query 61053 TCGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGG 61111
||| ||| |||| |||||| || ||||| | |||||| |||||||| || ||
Sbjct 4381 TCGATTCTGTAT-GTTCCCAATTCAGTATCCACAGATTTGGGAAATGTACAAGAAAGCCA 4439
Query 61112 AAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC 61171
|| || ||||||||||| || || |||||| | || || | | |||||||
Sbjct 4440 TGGCATCTTTCTGGACGGTAGAAGAAGTCGATCTATCTTCTGATAATCGTCACTGGGAAA 4499
Query 61172 GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGG 61231
|| | ||||||| ||||||||| | |||||| | || || |||||||| || |
Sbjct 4500 ACCTAACATCCGGTGAAAGACATTTCATCACTCATGTGCTTGCCTTTTTTGCCGCCTCAG 4559
Query 61232 ACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGG 61291
|||| ||||| ||||| | | | | ||| | | || || || || | ||||
Sbjct 4560 ACGGCATCGTTTTAGAGAACCTCGCAGGAAGGTTCATGAAAGACGTCCAGGTTGCTGAGG 4619
Query 61292 CGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTG 61351
||||| |||||| || ||||| || ||||| |||||| |||| || ||||||||||||
Sbjct 4620 CGCGTGCTTTCTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGTT 4679
Query 61352 TTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATC 61410
| || | || ||||||| | ||| | | || || | | | ||||||| ||| |||
Sbjct 4680 TGCTGTTGGAGTCGTACATAAAGGATTCTGACGAAAAGAGCA-AATTGTTCCGTGCAATC 4738
Query 61411 GAGACGATACC-GGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTAC 61469
||||| || || | | |||| ||| ||| | |||||| | ||||||| ||
Sbjct 4739 GAGACCATCCCTTGTGTTGAA-AAGAAGGCGAAATGGGCCCTTCGTTGGATCGATGGT-- 4795
Query 61470 AACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAG 61529
| | || || | || || ||| |||| ||||| || || || | || |||||
Sbjct 4796 -TCCGAAACTTTCGCGGAGCGCTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCAG 4854
Query 61530 TGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTT 61589
||| || | || ||||||||||| ||||| || | ||||| || | |||||
Sbjct 4855 CGGAAGCTTCTGTTCGATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACCTT 4914
Query 61590 CAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATT 61649
| |||||||| || ||| | ||||| || |||| ||||||||||| |||||| |
Sbjct 4915 CTCAAATGAGTTAATTTCAAGAGACGAAGGTTTGCACTGTGATTTTGCGTGTTTGCTTTA 4974
Query 61650 CAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGC 61709
|| | | || || | | |||||||| || | | ||| || || ||
Sbjct 4975 CA---GTTTGCTAAGGACGAAGCTAACTGAGGAGCGAGTCAGGGGAATTATTGCAGATGC 5031
Query 61710 GGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAA 61769
|| || ||| ||| || || ||| ||| | || | || | || |||||
Sbjct 5032 TGTGGAGATAGAAAGGGAGTTCGTGTGTGATGCTCTTCCTTGTGCTCTGGTGGGGATGAA 5091
Query 61770 TTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGG 61829
| | | | ||| | || || |||||||| || || | |||||| | ||||||
Sbjct 5092 TGGAGATTTGATGAGTAAATACATAGAATTTGTCGCTGATAGATTGTTGGATGCTTTGGG 5151
Query 61830 -TATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGG 61888
|||| | ||| || ||| | | || |||||||||| ||||| ||||| ||
Sbjct 5152 TTATG-ACAAGATGTACAATGCTCAGAATCCATTTGATTGGATGGAGCTGATTAGCCTAC 5210
Query 61889 ATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931
| || ||||| ||||| || ||||| | || || || |||||
Sbjct 5211 AAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCA 5253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397259525000960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |