Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_016654.1 Length=39474 Score E Sequences producing significant alignments: (Bits) Value seq63545 212 2e-50 >seq63545 Length=90175 Score = 212 bits (234), Expect = 2e-50 Identities = 257/341 (75%), Gaps = 12/341 (4%) Strand=Plus/Minus Query 12175 GACACCCTGATCACCATCATCGGCAACCTGGTGGCGGACCCCGAGTTGCGGTTCACGCCG 12234 || ||| | ||||| | | |||||||| |||||||| ||| |||| | ||||| | Sbjct 74087 GAAACCGTCATCACGGTGGTGGGCAACCTCACCGCGGACCCGGAGCTGCGCTACACGCAG 74028 Query 12235 GCCGGTGCT-GCCGTCGCCAACTTCACCGTCGCGTCCACGCCGCGCACGTTCGACAAGCA 12293 ||| ||| ||||| || ||||||||| |||||||||| || |||||||||||| || Sbjct 74027 AACGG-GCTCGCCGTGGCGAACTTCACCATCGCGTCCACCCCTCGCACGTTCGACCGTCA 73969 Query 12294 GGCGAACGAGTGGAAGGACGGGGAGGCGCTGTTCATGCGCTGCCAG-GTGTGGCGTGAGG 12352 ||||||||||||||||||||| || ||||||||| | || ||| || |||||||| ||| Sbjct 73968 GGCGAACGAGTGGAAGGACGGCGACGCGCTGTTCCTCCG-TGCGAGCGTGTGGCGCGAGT 73910 Query 12353 CCGCCGAGAACGTCGCCGAGAGCT---TGTCGCGGGGCTCGCGGGTCATCGTCACCGGCA 12409 ||||||| |||| || | ||| || || |||||| || ||||||| | | || Sbjct 73909 TCGCCGAGCACGTGGC---GGGCTCACTGACGAAGGGCTCCCGCGTCATCG-CGCAGGGT 73854 Query 12410 AGCTCAAGTC-CCGCACCTTCGAGACGCGTGAGGGGGAGAAGCGGACCGTCATCGAACTG 12468 || ||| ||| ||| | || |||||||| || |||| || |||||| || Sbjct 73853 CGCCTCCGTCAGCGCTCCTACCAGGACCGTGAGGGCCAGCAGCGCACGAGCATCGAGCTC 73794 Query 12469 GAGGTCGACGAGATCGGCCCCAGCCTCCGCTACGCCACCGC 12509 ||||||||||||||||||||| ||||||||||| ||||| Sbjct 73793 GAGGTCGACGAGATCGGCCCCTCGCTCCGCTACGCGACCGC 73753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126099795166848