Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq12586 131 9e-29 seq6726 125 4e-27 seq25857 123 1e-26 seq21516 113 3e-23 seq6048 113 3e-23 seq32225 111 9e-23 seq23223 109 3e-22 seq38627 107 1e-21 seq12587 107 1e-21 seq21903 93.3 2e-17 seq12585 93.3 2e-17 seq38610 73.4 2e-11 >seq12586 Length=67103 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 26093 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 26034 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 26033 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 25977 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| ||||| || || |||||| || |||||| || Sbjct 43556 GAACCCAAAAACTTTGATTTCTCATAAGGCGCTGACGGAGTCATAAAAGCAACATCCGCC 43497 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||| || Sbjct 43496 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTTGA 43440 Score = 123 bits (136), Expect = 1e-26 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||| | | ||||||||||||| |||||||||| ||||| ||| |||||| || Sbjct 55579 AACCTAGAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCAAAAAGCAACATCCGTCG 55520 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 55519 ATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 55464 Score = 116 bits (128), Expect = 2e-24 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 4157 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 4098 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||| |||||||| ||| |||| Sbjct 4097 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGATATCTGATTGTCATCGA 4041 >seq6726 Length=33565 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 27816 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 27875 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| ||| |||||||||||||||||| Sbjct 27876 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACTGTATCTGATCGTCTTCGA 27932 Score = 98.7 bits (108), Expect = 6e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||| ||||||| ||||||||||| ||||| | || ||| || Sbjct 11003 GAACCCAAAAACTTTTATTTCTCATAAGGTGCCGACGGAGTCCTAGAAGCAATATCTGCC 11062 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||| ||||| |||| ||| | | ||||| |||||||||| || Sbjct 11063 GATCCCTAGTCGGCATCGTTTATGGTTGAGAGTGGAATGGTATATGATCGTCTTTGA 11119 >seq25857 Length=23165 Score = 123 bits (136), Expect = 1e-26 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| | Sbjct 1923 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGTC 1864 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||| ||||||||||||||||| Sbjct 1863 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGRTATCTGATCGTCTTCGA 1807 >seq21516 Length=48886 Score = 113 bits (124), Expect = 3e-23 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 1364 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 1305 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| |||||||| ||||| |||| |||||| || |||||||||||||||||| Sbjct 1304 GATCCGCTGTCGGCATCGTTTATGGTTGAGACTAGGATTGTATCTGATCGTCTTCGA 1248 Score = 113 bits (124), Expect = 3e-23 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || ||||| | Sbjct 15191 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCGACATCAGTC 15132 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| ||||| ||||||||||||||||||| || Sbjct 15131 GATCCCTGGTCGGCATTGTTTATGGTTGCGACTAGGACGGTATCTGATCGTCTTAGA 15075 >seq6048 Length=36209 Score = 113 bits (124), Expect = 3e-23 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 11 ACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGT 70 ||||||||||||| ||||||| || ||||| || |||||| ||||||||| || Sbjct 28550 ACTTTGATTTCTCATAAGGTGTCGGCAGAGTCCTAAAAGCAACATCCGCCGATCCCTGGT 28609 Query 71 CGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 28610 CGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 28656 >seq32225 Length=12402 Score = 111 bits (122), Expect = 9e-23 Identities = 97/118 (82%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGA-GTCAAAATGATAACATCGCC 59 ||||||||| | ||||||||||| |||||||||| |||| ||| || |||||| | Sbjct 2705 GAACCCAAAAATTTTGATTTCTCATAAGGTGCCG-GCGAAGTCCTAAAAGCAACATCTGC 2647 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| | |||||||| |||| ||||||||||| ||| ||||||||||||||||| Sbjct 2646 CGATCCATGGTCGGCATCATTTATGGTTAAGACTAGTACGATATCTGATCGTCTTCGA 2589 >seq23223 Length=33215 Score = 109 bits (120), Expect = 3e-22 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 13 TTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCG 72 ||||||||||| |||||||||| ||||| || ||||| |||||||||||||| Sbjct 27182 TTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATTCGCCGATCCCTAGTCG 27241 Query 73 GCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||| ||||| |||| |||||| |||||||||||||||||||| Sbjct 27242 GCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTC 27284 >seq38627 Length=5308 Score = 107 bits (118), Expect = 1e-21 Identities = 94/116 (81%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||| ||||||||||||| |||||||||| ||||| || |||||| ||| Sbjct 2028 AACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCCG 1969 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | |||||||| |||| |||| ||||| |||||||||||||| ||||||| Sbjct 1968 ATCCTTGGTCGGCATCATTTATGGTT-GGACTAGGACGGTATCTGATCATCTTCGA 1914 >seq12587 Length=23565 Score = 107 bits (118), Expect = 1e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||| ||| ||||||||||||| |||||| ||| || || || |||||| || Sbjct 15449 GAACCAAAAAACTTTGATTTCTCATAAGGTACCGGCAGATTCCTAAGAGAAACATCCGCC 15390 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| |||||||| |||| |||| |||||| |||||||||||||||||||||| Sbjct 15389 AATCCCTGGTCGGCATCATTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 15333 >seq21903 Length=8256 Score = 93.3 bits (102), Expect = 2e-17 Identities = 93/118 (79%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTC-AAAATGATAACATCGCC 59 ||||||||| ||||||||||||| |||| ||||| |||| ||| || ||||| | Sbjct 1108 GAACCCAAAAACTTTGATTTCTCATAAGCTGCCGGTGAAGTCTTAAAAGA-AACATTCAC 1166 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| | |||| ||| ||||| |||| ||| || || | ||| ||||||||||||| Sbjct 1167 CGATCCGTGGTCGTCATCGTTTATGGTTGAGATTAGGATGATATATGATCGTCTTCGA 1224 >seq12585 Length=1703 Score = 93.3 bits (102), Expect = 2e-17 Identities = 95/119 (80%), Gaps = 4/119 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCA-AAATGATAACATCGC 58 ||||||||| ||||||||||||| ||||||| || ||| | ||| ||||| |||||| Sbjct 717 GAACCCAAAAACTTTGATTTCTCATAAGGTGTCG-GCGAATTCATAAATG-CAACATCCG 660 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| | ||| | || ||||| |||| |||||| |||| |||||||| || |||| Sbjct 659 TCGATCCTTGGTCCGTATCGTTTATGGTTGAGACTAGGACGATATCTGATTATCATCGA 601 >seq38610 Length=5387 Score = 73.4 bits (80), Expect = 2e-11 Identities = 71/89 (80%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 7 AAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAG-TCAAAATGATAACATCGCCCGATCC 65 ||| ||||||||||||| ||||||| || ||| || ||| | |||||| | ||||| Sbjct 2954 AAAAACTTTGATTTCTCATAAGGTGTCGGCGGAGTTCTAAAAG-CAACATCCGCGGATCC 2896 Query 66 CTAGTCGGCATAGTTTACGGTTAAGACTA 94 || |||||||| ||||| |||| |||||| Sbjct 2895 CTGGTCGGCATCGTTTATGGTTGAGACTA 2867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278287796100