Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq34285 113 6e-23 seq10764 109 8e-22 seq2753 107 3e-21 seq245 104 3e-20 seq15907 102 1e-19 seq15766 98.7 1e-18 seq35109 96.9 5e-18 seq10450 96.9 5e-18 seq10896 95.1 2e-17 seq4428 87.8 2e-15 seq17795 86.0 9e-15 seq24933 80.6 4e-13 seq24009 75.2 2e-11 >seq34285 Length=2838 Score = 113 bits (124), Expect = 6e-23 Identities = 173/245 (71%), Gaps = 24/245 (10%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTC--TTCGCACGGA 63 || ||| ||| |||| || ||||| || ||||||| | ||||| | | || | | || Sbjct 2227 CCCTCCGGCACTGGGCTGGAGTCAGCCCTTATACATGGTCTTAC-GACATTTTGGA--GA 2171 Query 64 CCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACA 123 ||||||||||| |||||||||||| || || |||||||| || Sbjct 2170 CCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT----------- 2122 Query 124 CGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTC 183 | || || || ||||||||||||||||||||||||||| |||||||||| ||| Sbjct 2121 --TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTC 2070 Query 184 CTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTA 243 |||| | |||| | || | ||| ||||||||||||| |||||||||| |||| Sbjct 2069 CTTAGAGAAAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTAAGTTTT 2010 Query 244 CGGTA 248 |||| Sbjct 2009 GGGTA 2005 >seq10764 Length=63545 Score = 109 bits (120), Expect = 8e-22 Identities = 149/206 (72%), Gaps = 12/206 (6%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 17142 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACC-ACTTAGCAGAGTCC 17200 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| | |||| | | ||| | || |||| | Sbjct 17201 TGTGTTTTTAATAAACAGTCGCTACTCTCTGGTATGTGCAGC--TTTCCTAATCAAAAGA 17258 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | | || |||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 17259 TGG-----GAG----AGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 17309 Query 186 TAACCACAGTTCACCCGAACGCCTTA 211 | || |||| | | | |||| || Sbjct 17310 TCRACATGGTTCTCTCAAGCGCCCTA 17335 >seq2753 Length=198618 Score = 107 bits (118), Expect = 3e-21 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||||||||||||||||||||||| ||||||||||| |||||| || |||| | | Sbjct 118046 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTC 118105 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | |||| |||||| |||||| || ||||||||| ||||| |||| Sbjct 118106 AAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTAGGTTTGGGGTA 118152 >seq245 Length=6911 Score = 104 bits (114), Expect = 3e-20 Identities = 169/243 (70%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| |||||| |||| |||| | ||||||||| ||||| | ||| || Sbjct 1465 CCTTCCAGCACCGGACAGGTATCAGACTCTATACATCGTGTTACCACTTAAGCAGAATCC 1524 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| ||||||||| || | || | | || || | | |||| | Sbjct 1525 TGTGTTTTTAATAAACAGTCACTATCTCCTGGTATGTGTCACTTTCCTAA--TCAAAAGA 1582 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct 1583 T--------AGGAGAG-CACCCCTTCTCCCRAAGTTACGGGGTCATTTTGCCGAGTTCCT 1633 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | ||| | | |||| | |||||| |||||| || ||||||||||| ||| | Sbjct 1634 TTGATATGATTCCCTCAAACGTCCTAGTATACTCTACTTGTTCACCTGTGTCGATTTGGG 1693 Query 246 GTA 248 ||| Sbjct 1694 GTA 1696 >seq15907 Length=48904 Score = 102 bits (112), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 13/214 (6%) Strand=Plus/Plus Query 35 TATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTC 94 ||||| ||| ||||| ||| ||| | |||||||||||| |||||||||||| ||| | Sbjct 17433 TATACTTCGTGTTACCA-CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCC 17491 Query 95 TATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCAGCAGTGGCACCCCTTCTCC 154 | | | ||| | | | |||| | | || || | |||||||||||| Sbjct 17492 TGGTATGTGCCGCTTTCCTAA--TCAAAAGAT--------AGGAGAG-CACCCCTTCTCC 17540 Query 155 CGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTA 214 ||||||||||||| ||||||||||| |||||| || |||| | | | ||| ||||| Sbjct 17541 CGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGSGCCCTAGTA 17600 Query 215 TTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | |||||| || || ||||||||||| |||| Sbjct 17601 TACTCTACTTG-TTACTTGTGTCGGTTTGGGGTA 17633 >seq15766 Length=8813 Score = 98.7 bits (108), Expect = 1e-18 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 ||||| ||||| || ||||||||||| ||||||||||| |||||| || |||| | | Sbjct 6204 GCACCTCTTCTTCCAAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTC 6263 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | |||| |||||| |||||| || ||||||||||||||| |||| Sbjct 6264 AAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTA 6310 >seq35109 Length=10850 Score = 96.9 bits (106), Expect = 5e-18 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||| ||| |||||||||| ||||||| | |||| | Sbjct 605 GGCACCCCTTCTCCCGAAGTTACGAGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 664 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | ||| ||||||||||||| |||| |||||| |||| |||| Sbjct 665 CACGCCCCTAGGTATTCTCTACCTACCCACATGTGTCTGTTTCGGGTA 712 >seq10450 Length=53292 Score = 96.9 bits (106), Expect = 5e-18 Identities = 168/244 (69%), Gaps = 23/244 (9%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 49351 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 49409 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| | | Sbjct 49410 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC-------------CCCT 49456 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || | | ||||||||||||||| || |||| |||| ||||| ||||||||| Sbjct 49457 TTGT------GAGGAGGCACCCCTTCTCCCAAAATTACAGGGCTATTTTCTCGAATTCCT 49510 Query 186 TAACCACAGTTCACCCGAACGCCTTA-GTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 || | |||| | || |||| || |||||||||| || || ||| | | |||| Sbjct 49511 TAGAGAGAGTTGTCTCG--CGCCCTAGGTATTCTCTAACTACCCGCCTCTATATGTTTCG 49568 Query 245 GGTA 248 |||| Sbjct 49569 GGTA 49572 >seq10896 Length=62744 Score = 95.1 bits (104), Expect = 2e-17 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||||||||||| || ||| |||| ||||||||||| |||||| || |||| | | Sbjct 36347 GCACCCCTTCTCCCAAATTTATGGGGTCATTTTGCCGAGTTCCTTGGACATGGTTCTCTC 36406 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | |||| |||||| |||||| || ||||||||| ||||| |||| Sbjct 36407 AAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTTGGTTTTGGGTA 36453 >seq4428 Length=24686 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCG 202 |||||||||||||||| |||||||| ||||||||||| |||||| | || ||| | Sbjct 13457 CACCCCTTCTCCCGAAATTACGGGGTCATTTTGCCGAGTTCCTTTAACATGATTCTCTGA 13516 Query 203 AACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | |||| || ||| |||||| || |||| ||||||||| |||| Sbjct 13517 AGCGCCCTAATATACTCTACTTGTTTACCTATGTCGGTTTGAGGTA 13562 >seq17795 Length=46930 Score = 86.0 bits (94), Expect = 9e-15 Identities = 86/109 (79%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||| ||||||||||| |||||||||| ||||||| | |||| Sbjct 11909 GGCACCCCTTCTCCTTAAGTTACGGGGATATTTTGCCGAGTTCCTTAGAGAGAGTTTTAT 11968 Query 201 CGAACGCCTTAG-TATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | || |||||| |||||||||||| |||| ||||||| ||| |||| Sbjct 11969 C-AATCCCTTAGATATTCTCTACCTACCCACTTGTGTCGATTTCAGGTA 12016 >seq24933 Length=36177 Score = 80.6 bits (88), Expect = 4e-13 Identities = 76/95 (80%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 ||| | |||||| || |||||||| ||||| | ||||||||| ||||| ||| ||| Sbjct 6102 CTTCTTCTTCCAACATCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAG 6044 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCT--TCCCT 93 | |||||||||||| |||||||||||| ||||| Sbjct 6043 AGTCCTGTGTTTTTAATAAACAGTCGCTACTCCCT 6009 >seq24009 Length=11678 Score = 75.2 bits (82), Expect = 2e-11 Identities = 44/46 (96%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186 |||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 9289 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTT 9244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694110806270