Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq34285 93.3 4e-17 seq15907 84.2 2e-14 seq2753 82.4 8e-14 seq17795 78.8 1e-12 seq24009 77.0 3e-12 seq35109 75.2 1e-11 seq10450 75.2 1e-11 >seq34285 Length=2838 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 2066 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 2123 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 2124 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 2173 >seq15907 Length=48904 Score = 84.2 bits (92), Expect = 2e-14 Identities = 79/100 (79%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| ||| | || || ||||||| ||| |||||| ||| || | ||| Sbjct 17628 CAAACCGACACAAGTAA-CAAGTAGAGTATACTAGGGCSCTTGAGAGAACCATGTCGAAG 17570 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 17569 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 17530 >seq2753 Length=198618 Score = 82.4 bits (90), Expect = 8e-14 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| ||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 118147 CAAACCTACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 118088 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 118087 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 118048 >seq17795 Length=46930 Score = 78.8 bits (86), Expect = 1e-12 Identities = 84/110 (76%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| ||||||| ||| || |||| ||| | | ||| || Sbjct 11955 TAAGGAACTCGGCAAAATATCCCCGTAACTTAAGGAGAAGGGGTGCCTCCTTACAAAAGG 11896 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | | ||||| || || || |||||||||||| |||||||||||| || Sbjct 11895 G--GTCGCAGTGACCCGGCCCGGGCAACTGTTTACCAAAAACACAGGTCT 11848 >seq24009 Length=11678 Score = 77.0 bits (84), Expect = 3e-12 Identities = 83/109 (76%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 81 AAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGG 140 |||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| || Sbjct 9244 AAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GG 9301 Query 141 AGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 || | || || || || ||| |||||||| |||||||||||| || Sbjct 9302 GGGTCATAGTGACCGGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 9350 >seq35109 Length=10850 Score = 75.2 bits (82), Expect = 1e-11 Identities = 120/169 (71%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| || | ||| || |||| ||| || |||| || | | | |||| Sbjct 706 AAACAGACACATGTGGGTAGGTAGAGAATACCTAGGGGCGTGAGACAA-CTCTCTCTAAG 648 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | || |||||||||||| || |||| ||| | || ||| || || Sbjct 647 GAACTCGGCAAAATAGCCTCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GGGGG 590 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTG 192 | ||| | |||| | ||||| |||||| |||||| ||| | || || Sbjct 589 TCACAGCTACTAGGCCTGGGCAATTGTTTACCAAAAAGACAAGTCTTTG 541 >seq10450 Length=53292 Score = 75.2 bits (82), Expect = 1e-11 Identities = 83/110 (75%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||| | | ||| | |||||||| || |||| || |||| ||| | || ||| || Sbjct 49512 TAAGGAATTCGAGAAAATAGCCCTGTAATTTTGGGAGAAGGGGTGCCTCCTCACAAAGGG 49453 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | | ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 49452 G--GTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 49405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530978773460