Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq34285 156 8e-36 seq32077 127 4e-27 seq39016 111 3e-22 seq1606 105 1e-20 seq19131 98.7 2e-18 >seq34285 Length=2838 Score = 156 bits (172), Expect = 8e-36 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| || |||| |||||||||| ||||||||||| Sbjct 2605 GGGACAGTCTCAGCTAGACAGTTTCTATGAGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 2664 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACA-GTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | || ||| | || | || ||||||||||| ||||| Sbjct 2665 GTGCAAAGGTTTCCTCGGTCCAGACGGAGATTG-GCCCTCAAGTGCAAAGGCAGAAGGGA 2723 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| ||||||||||||| | || |||| ||||||| ||| Sbjct 2724 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAATAGGCCTTAGTGATCCGACGG 2783 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| || |||||||| |||||||||| ||| || |||||| Sbjct 2784 TGCCGAGTGGAAGGGTCGTCGCTCAACGGATAAAATTTACTCTAGGGATA 2833 >seq32077 Length=10789 Score = 127 bits (140), Expect = 4e-27 Identities = 148/196 (76%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC-AGCTTGGATGGAAACCATGC 206 |||||||||| |||| ||||||| ||||| | |||| ||| ||||||| ||| Sbjct 182 GCCTCCCAAAAGGTAATGGAGGCGTGCAAAGCTTTCCTCGAGCC-GGATGGA---CATTG 237 Query 207 GCAC---AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGAC 263 | | |||||||||||| ||||| || ||||| | | | | ||| |||||||| Sbjct 238 GTCCTCGAGTGCAAAGGCAGAAGGGATCTTAACTGCAAGATCTACCCGTCGAGCAGGGAA 297 Query 264 GAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAA 323 ||||||| | |||| ||||||| |||||| || ||||| || |||||||| ||| ||||| Sbjct 298 GAAAGTCAGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGACGTCGCTCAACGAATAAA 357 Query 324 AGCTACCCTGGGGATA 339 || ||| || |||||| Sbjct 358 AGTTACTCTAGGGATA 373 >seq39016 Length=4815 Score = 111 bits (122), Expect = 3e-22 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| || | || ||| | |||||| || |||| || ||||||||||| Sbjct 648 GGGACAGTCCCATGTAGACATTTTCAATGGGGCATAGGCTTCCCTAAAGGTAACGGAGGC 589 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | | ||| || | ||| | | |||||||||||| ||||| Sbjct 588 GTGCAAAGGTTTCCTCGGGTCGGACAGAGATT-TGCACTCGAGTGCAAAGGCAGAAGGGA 530 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | ||| | || |||| |||||||| |||| |||| |||| || ||| Sbjct 529 GCTTGACTGCAAGACCAACCCATCGAGCATGGACGAAATTCGGCCTTAGTGATTCGACGG 470 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| | || |||| | ||||||| ||| || |||||| Sbjct 469 TGCCGAGTGGAAGGTATGTTGCTCAGTGAATAAAAGTTACTCTAGGGATA 420 >seq1606 Length=297999 Score = 105 bits (116), Expect = 1e-20 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 212 GTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCG 271 ||||||||||| || || | ||| ||| | |||| | | || ||| | ||||| | Sbjct 285459 GTGCAAAGGCAGAATGGAGATTGGATGCAAGACCCACCCGATGAGTAGGTATAAAAGTTG 285400 Query 272 GGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCC 331 | |||||||||||| ||||||||| | ||| ||||||||||| ||||||||||| ||| | Sbjct 285399 GCCTTAATGATCCGACGGTGCTGAGTAGAAGGGCCGTCGCTCAACGGATAAAAGTTACTC 285340 Query 332 TGGGGATA 339 | |||||| Sbjct 285339 TAGGGATA 285332 >seq19131 Length=34028 Score = 98.7 bits (108), Expect = 2e-18 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 216 AAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCT 275 ||||| | ||||| | |||||| | | |||| | ||| ||||||||||||||||| || Sbjct 29357 AAAGGTAGAAGGGAGCTTGACTACAAGACCCACCCGTCGAGCAGGGACGAAAGTCGATCT 29298 Query 276 TAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGG 335 || |||||| |||||| || || || | |||||||| | |||||||| ||| || || Sbjct 29297 TAGTGATCCCACGGTGCCGAGTGAAAAAGTCGTCGCTCAATAGATAAAAGTTACTCTAGG 29238 Query 336 GATA 339 |||| Sbjct 29237 GATA 29234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981977666240