Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= AAMG01001210.1 Length=647 Score E Sequences producing significant alignments: (Bits) Value seq12628 378 3e-102 >seq12628 Length=46081 Score = 378 bits (418), Expect = 3e-102 Identities = 312/379 (82%), Gaps = 15/379 (4%) Strand=Plus/Plus Query 276 GCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTATAAGG 335 ||||||||||||||||| ||||||||||| ||||||||| |||||||||| || |||| Sbjct 16623 GCTCCAAAGAGGAAAAGACCAAGGCAAGTCTTGGAAAATCCTGGAGGATTTAGTGTAAGA 16682 Query 336 AGCAGCCCCATTTCG---------GCTAAAGTGGAGATGGATCAAACAACAATGAAGATG 386 |||||||||||||| |||||||| ||||||||||| |||||||||||| | Sbjct 16683 AGCAGCCCCATTTCATCTTCTACAGCTAAAGTTGAGATGGATCAGACAACAATGAAGTTA 16742 Query 387 GAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTACAGCGGAAAATGGAGTTTCC 446 ||||||| ||| |||||||||||||||| |||||| || | || |||||||| ||||| Sbjct 16743 GAGGTTTTTTCACCTAATTTGGAGAAGAACCCACAGACTGCTGCTGAAAATGGTGTTTCT 16802 Query 447 TTATATGATTTGGGTGCTTCTGTACAAAGTTTGCCGGTGGTAACAGATCCGGTACCGGAG 506 ||||||||||| ||| ||| | ||||||||||||| || | |||||||||||||||| Sbjct 16803 TTATATGATTTAAGTGGTTCCGCTCAAAGTTTGCCGGCGGCAGTAGATCCGGTACCGGAG 16862 Query 507 CCGATGAAGGTTGAATCTGAGGTCAAGAGGAGGCCTGATGAATCTGAATTTACTATGGAG 566 ||||||||| | |||||||| ||||||||||||||||||||| ||||||| ||||||| Sbjct 16863 CCGATGAAGATGGAATCTGACGTCAAGAGGAGGCCTGATGAAACTGAATT---TATGGAG 16919 Query 567 AGTAAAGTGGAAGTGAATTCACCTAAGAAGGATACTTCTACTGTTGTTGCAGCGGAGAGT 626 ||||| | |||||||||||| || |||| ||| ||| |||| ||| | || || | | Sbjct 16920 AGTAAGGAGGAAGTGAATTCCCCAAAGAGGGAATCTTTTACT-TTG--GGAGTAGATAAT 16976 Query 627 AGTATTCATGAGGTTGCTG 645 ||||||| ||||| || || Sbjct 16977 AGTATTCGTGAGGATGTTG 16995 Score = 246 bits (272), Expect = 1e-62 Identities = 203/245 (83%), Gaps = 17/245 (7%) Strand=Plus/Plus Query 39 AAGCCACACGGACAAAAAAGGCCACCAGCAAAGTCACCACCTAAAGCTTCTTCATCTAAT 98 ||||| | |||||||| |||| || ||||||||||| || ||||||||||||||||| Sbjct 16291 AAGCCTAATGGACAAAAGCGGCCGCCGGCAAAGTCACCTCCAAAAGCTTCTTCATCTAAC 16350 Query 99 CCTGAAGAGCTGGAGATTGAGATTGCTGAAGTTCTTTTTGGTTTG-------AGTCATCA 151 ||||||||||| ||||||||||||||||||||||| | ||| ||| ||||| || Sbjct 16351 CCTGAAGAGCTTGAGATTGAGATTGCTGAAGTTCTGTATGGATTGATGACTCAGTCA-CA 16409 Query 152 TGGACCTTCCAAAAAAGATACAAGTGTGACAAATGATAATACAAGAGAAGTTAATAATAA 211 |||||||| |||||||| |||||| |||||| ||||||||||||| |||||| Sbjct 16410 AGGACCTTCAAAAAAAGA---AAGTGTACCAAATG---ATACAAGAGAAGT---TAATAA 16460 Query 212 CAGATCCAGAGTTTCATCTCCTGTTTCTAATTCTAACTCATCAGCTACTCCTTTATCTGC 271 ||||||||||||||| ||||| | ||||||||| ||||||||||| ||||||||||||| Sbjct 16461 CAGATCCAGAGTTTCTTCTCCAGCTTCTAATTCAAACTCATCAGCAACTCCTTTATCTGT 16520 Query 272 TGCTG 276 || || Sbjct 16521 TGTTG 16525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1963928936620