Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq1684 105 6e-21 seq28335 104 2e-20 seq10613 104 2e-20 seq9638 102 7e-20 seq7933 100 2e-19 seq7051 96.9 3e-18 seq10451 93.3 4e-17 seq2084 86.0 5e-15 seq3412 84.2 2e-14 seq9092 77.0 3e-12 seq1854 77.0 3e-12 >seq1684 Length=81293 Score = 105 bits (116), Expect = 6e-21 Identities = 114/150 (76%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||| ||| | ||||| ||| | | ||||| || || ||||| ||| | | Sbjct 80376 CGAGTTGTAGAGAAAAATCCAAACTGAGGCAATCTTTCCGG-ATACGCTCCGCCTTACAG 80318 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 80317 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 80258 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCC 151 |||||||||||||||||||||||||||||| Sbjct 80257 GAGGACTTGACGTCATCCCCACCTTCCTCC 80228 >seq28335 Length=25838 Score = 104 bits (114), Expect = 2e-20 Identities = 115/151 (76%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||| |||||| || ||||||| ||| | ||| | ||| || | ||||||| |||||| | Sbjct 22076 CGATTTGCAGCCTGCAATCCGAACTGAGGATGGATTTT-TGTGGTTAGCTCACCCTCGTG 22134 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || | |||||||| ||| |||||| |||||||| | | | |||||||| || Sbjct 22135 GGATCGCGGCCCTTTGTCCCGGTGATTGTAGGACGTGTGTCACTCAAGTCATAAGGGGCA 22194 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCC 151 ||| ||||||| ||||||| ||||||||||| Sbjct 22195 TGATGACTTGATGTCATCCTCACCTTCCTCC 22225 >seq10613 Length=2253 Score = 104 bits (114), Expect = 2e-20 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||| ||| |||| |||| Sbjct 888 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTATCTCACCCTTGCGG 829 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 828 GATTGCGACCCTTTGTCCTGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 769 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCC 151 || ||||||| ||||||| ||||||||||| Sbjct 768 GATGACTTGAGGTCATCCTCACCTTCCTCC 739 >seq9638 Length=120561 Score = 102 bits (112), Expect = 7e-20 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||| ||| || ||||||| ||| | ||| |||| ||||||| ||||||| | Sbjct 116626 CGAGTTRCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCAG 116567 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||| | |||| |||||||| | | Sbjct 116566 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGCGTTGCCCAGGACATAAGGGGCCT 116507 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCC 151 || ||||||||||||||| ||||||||||| Sbjct 116506 GATGACTTGACGTCATCCTCACCTTCCTCC 116477 >seq7933 Length=37066 Score = 100 bits (110), Expect = 2e-19 Identities = 113/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 23970 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 24028 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | | |||||| ||||||| |||| || |||||||| ||| Sbjct 24029 CCTTGCTTCCCATTGTAATTGCTATTGTAGCACGTGTGTGGCCCAACTCATAAGGGTCAT 24088 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCC 151 | ||||||||||||||||||| |||| ||| Sbjct 24089 GCGGACTTGACGTCATCCCCATCTTCTTCC 24118 >seq7051 Length=38202 Score = 96.9 bits (106), Expect = 3e-18 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||| | || | | ||| |||| |||| || ||| || | Sbjct 15100 CGAGTTGCAGCCTGCAATCTGAGCTTAGGAAGGGTTTTTGGGGTTAGGTCACCCACGTAG 15159 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| | |||| || | ||||| |||| | |||||||| ||| Sbjct 15160 GATCGCGACCCTTTGTCTTGGACATTCTAGCATGTGTGTCGCCCAAGGCATAAGGGGCAT 15219 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTC 159 || ||||||||||||||| ||||||||||||| || || Sbjct 15220 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATC 15257 >seq10451 Length=4903 Score = 93.3 bits (102), Expect = 4e-17 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 ||||||||| |||||||||| ||| || ||| | | || | ||||| ||||| |||| Sbjct 304 GAGTTGCAGCCTACAATCCGAACTGAGA-ACATATGTTTGGTTGAGCTCACCCTCACGGG 362 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | | | || | ||| | || ||| | |||| |||| | |||||||| |||| Sbjct 363 ATCGTGACCTTTTGTCCCGGC-ATAGTAGCATGTGTATCGCCCAAGGCATAAGGGGCATG 421 Query 123 AGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||| |||||| ||||||||||||| || |||| Sbjct 422 ATGACTTGACSTCATCCTCACCTTCCTCCGGCTTATCAC 460 >seq2084 Length=167124 Score = 86.0 bits (94), Expect = 5e-15 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||| || || ||||| | ||| | ||| |||| | |||| ||||||||| Sbjct 37336 CGAGTTGTAGCCTTCAATCAGAACTGAGGACTGGTTTTTGGGGTAAGCTAACCCTCGCGG 37277 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | | | |||| ||| ||||| || |||||| ||||| |||||||| || Sbjct 37276 GATCGAGACCCTTTGTCCCGTCCATTATAGCACGTGTATTGCCCTGGGCATAAGGGGAAT 37217 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||| ||||||||||| ||||| ||||||| || |||| Sbjct 37216 GATGACCTGACGTCATCCTCACCTACCTCCGGCTTATCAC 37177 >seq3412 Length=130148 Score = 84.2 bits (92), Expect = 2e-14 Identities = 117/160 (73%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||||| | |||||| | | | ||| | ||| |||||||||||| |||| ||| Sbjct 62320 CGAGTTGCAACTTGCAATCCAAATTGATGAT-CGGTTTTTGGGATTAGCTCACCCT-GCG 62377 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || | | |||| ||| | | ||||||| ||||||| ||| | |||||||| || Sbjct 62378 GGATCTCTACCCTTTGTCTCAAAAATTGTATCACGTGTGCCGCCGAAGGCATAAGGGGCA 62437 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160 | |||| ||| ||||| ||||||||||||| || ||| Sbjct 62438 TAGTTACTTCACGACATCCTCACCTTCCTCCGGCTTATCA 62477 >seq9092 Length=11766 Score = 77.0 bits (84), Expect = 3e-12 Identities = 83/110 (75%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| |||| ||||||| |||||||||| | || |||| | | |||||||| ||| Sbjct 1594 TTTTTGGGGTTAGCTCACCCTCGCGGGATCGCAACCCTTTTTCCTGGCCATTGTAGCACG 1653 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCT 145 |||| |||| ||| ||| ||||| ||||||||||||||| ||||| Sbjct 1654 TGTGTCGCCCAGGGCATGAGGAGCATGATGACTTGACGTCATCCTCACCT 1703 >seq1854 Length=184757 Score = 77.0 bits (84), Expect = 3e-12 Identities = 62/75 (83%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 75 TGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGT 134 |||| | |||||||| ||||||| | || |||||||||||||||| | |||| |||| Sbjct 131232 TGTAATTGCCATTGTAGCACGTGTGTGGACCAACCCATAAGGGCCATGCGCACTTAACGT 131291 Query 135 CATCCCCACCTTCCT 149 ||||||||| ||||| Sbjct 131292 CATCCCCACTTTCCT 131306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415826750300