Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq10613 140 5e-31 seq34284 105 1e-20 seq13629 105 1e-20 seq7051 102 1e-19 seq9638 95.1 2e-17 seq1854 91.5 2e-16 seq5349 77.0 5e-12 >seq10613 Length=2253 Score = 140 bits (154), Expect = 5e-31 Identities = 202/285 (71%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||| | | ||||||| || ||| || |||||||| | Sbjct 335 GCTTTCGTCTCTCAGTGTCAATATCGGTCCAGCGGAGTGCTTTCACCGTTGGTGTTCTTT 276 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 275 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 216 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 ||||| | | | | |||||||||| | ||| ||| | ||||| Sbjct 215 CTTGGTAGTTTACACCACCTGTCAAGGGTTGAGCCTTGGGATTTGACAGCGGACTTAAAA 156 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| || ||||| Sbjct 155 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATTCTCTTTATTA 96 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 95 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 51 >seq34284 Length=5573 Score = 105 bits (116), Expect = 1e-20 Identities = 189/276 (68%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 8 TTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCG 67 ||||| ||||| |||||| | |||||| || ||| || |||||||| | | Sbjct 4570 TTTCGTATCTCAGTGTCAGTGTCGTCCCAGCAGAGTGCTTTCTCCGTTGGTGTTCTTTCC 4511 Query 68 TATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAA 127 | | |||||||||||| ||| ||| | |||||| |||| || | | |||| || Sbjct 4510 GGTCTTTACGCATTTCACTGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAGCT 4451 Query 128 AAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTC 187 |||||| | || | |||||||||| ||| || | ||||| Sbjct 4450 TGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCGTGGCATTTGACGGCGGACTTAAAAAG 4391 Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 4390 CCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTACATTACC 4331 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 ||||||||||||| |||||| || ||||||||| Sbjct 4330 GCGGCTGCTGGCAAAGAGTTAGACGATGCTTATTCC 4295 >seq13629 Length=19769 Score = 105 bits (116), Expect = 1e-20 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||||| Sbjct 271 CCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTTTGTATTACC 212 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||| |||||||| ||||||||| ||| || Sbjct 211 GCGGCTGCTGGCACAGAGTTAGCCAATGCTTATTCCCCAGATA 169 >seq7051 Length=38202 Score = 102 bits (112), Expect = 1e-19 Identities = 190/277 (69%), Gaps = 8/277 (3%) Strand=Plus/Plus Query 16 CTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTA 75 ||||| |||||| | | |||||| || |||||| |||||||| | | || | || Sbjct 15660 CTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTTCCGATCTTTA 15719 Query 76 CGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGC--ACTCAAGAAAAACAG 133 | ||||||| |||| ||| || || ||| ||||| | | |||| || || Sbjct 15720 CACATTTCAACGCTCCAC-CGAAA-----ATTTCCTCTGTACCGTACTCCAGCTTGGTAG 15773 Query 134 TTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCT 193 |||| | ||| | ||||||||||| | | ||| || ||||| || ||| Sbjct 15774 TTTCCACTGCCTGTCCAGGGTTGAGCCCTTGGATTTGACGGTGGACTTAAAAATCCACCT 15833 Query 194 ACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCT 253 ||| | |||||| | | | | || ||||||| ||||| ||| |||||||| |||| Sbjct 15834 ACAAACGCTTTACTACTATTCATTCTGGATAACTCTTGCATCCTCTATATTACCGTGGCT 15893 Query 254 GCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||| ||||||||| ||||||||| ||| || Sbjct 15894 GCTGGCACATAGTTAGCCAATGCTTATTCCCCAGATA 15930 >seq9638 Length=120561 Score = 95.1 bits (104), Expect = 2e-17 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 201 CTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCA 260 |||||| |||||| | ||| |||||| ||||| ||| ||||||||||||||||||||| Sbjct 115879 CTTTACGCCCAATCATTCCAGATAACACTTGCATCCTCTGTATTACCGCGGCTGCTGGCA 115820 Query 261 CGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 | ||||||||| ||||||||| ||| || Sbjct 115819 CAGAGTTAGCCGATGCTTATTCCCCAGATA 115790 >seq1854 Length=184757 Score = 91.5 bits (100), Expect = 2e-16 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 |||||||| ||||||||| |||| | | |||| | ||| |||||| || ||||||| | Sbjct 132195 CCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTATTATC 132254 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 | |||||||||||| ||||||| | ||||| |||||| Sbjct 132255 GTGGCTGCTGGCACAGAGTTAGCTGGGGCTTCTTCCTC 132292 >seq5349 Length=180300 Score = 77.0 bits (84), Expect = 5e-12 Identities = 68/87 (78%), Gaps = 10/87 (11%) Strand=Plus/Minus Query 201 CTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCA 260 ||||||||||||| | || ||||||| || ||||||||||||||||||||| Sbjct 68255 CTTTACACCCAATCATTCTGGATAACACT----------GTATTACCGCGGCTGCTGGCA 68206 Query 261 CGTAGTTAGCCGTGGCTTATTCCTCAG 287 | ||||||||| ||||||||| ||| Sbjct 68205 CTGAGTTAGCCGATGCTTATTCCCCAG 68179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828454833290