Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq15960 122 2e-25 seq1722 114 2e-23 seq8130 98.7 2e-18 seq2386 93.3 8e-17 seq25267 89.7 9e-16 seq20518 87.8 3e-15 seq34285 86.0 1e-14 seq17795 80.6 5e-13 seq5271 77.0 6e-12 seq1099 77.0 6e-12 >seq15960 Length=33605 Score = 122 bits (134), Expect = 2e-25 Identities = 175/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| || | ||| |||| Sbjct 33379 GGTGGATACCTAGGCACCCAAAGACGAGGAAGGGCGTAGTAATCGAYGAAATGCTTCGGG 33320 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| | | |||| ||| | Sbjct 33319 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCGAATAGAGCAACC------TTTCGAA 33267 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 33266 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACTTGGCGAACTGAAACATCTTAGT 33210 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||| | ||||| ||||||||||||||| || Sbjct 33209 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCTCGTAGTAGCCGCGAGCGAAATGGGAGCAG 33150 Query 249 CCT 251 ||| Sbjct 33149 CCT 33147 >seq1722 Length=1963 Score = 114 bits (126), Expect = 2e-23 Identities = 174/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| |||||| ||| | ||| |||| Sbjct 1550 GGTGGATACCTAGGCACACAGAGACGAGGAAGGGAGTAGTAATCGACGAAATGCTTCGGG 1491 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| | |||| ||| |||| ||| | Sbjct 1490 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCTGAATAGGGCAACC------TTTCGAA 1438 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| || || | ||| || ||| ||||||||||||||||| ||| Sbjct 1437 C--TGC-TGCTGAATCTATGGGCAGGCACGAGACAACCTGGCGAACTGAAACATCTTAGT 1381 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| ||| |||||||||||| || Sbjct 1380 AGCCAGAGGAAAAGAAAGCAAAAGTGATTCCCGTAGTAGCGGCTAGCGAAATGGGAGCAG 1321 Query 249 CCT 251 ||| Sbjct 1320 CCT 1318 >seq8130 Length=1337 Score = 98.7 bits (108), Expect = 2e-18 Identities = 173/246 (70%), Gaps = 12/246 (5%) Strand=Plus/Minus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||| ||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| || Sbjct 959 ATGATGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAATCGACGAAATGCTTCG 900 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 |||||| | ||| | | |||||| ||||| ||||| ||| |||| || Sbjct 899 GGGAGTT-GAAAATATGCAAAGATCCGGAGATTCTCGAATAGGGCAACC-------TTAC 848 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATC-TA 185 | | ||| |||||||| ||| || | |||| || ||| |||||| ||||||||| | Sbjct 847 GA-ACTGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAATTGAAACATCATT 790 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGAT 245 |||| | ||||||||||| ||| | |||| ||| ||||| || |||| |||||||| Sbjct 789 AGTATCCAGAGGAAAAGAAAGCAAAAGTGATTTCCATAGTAGCGGAGAGCAAAATGGGAG 730 Query 246 GAGCCT 251 ||||| Sbjct 729 CAGCCT 724 >seq2386 Length=159390 Score = 93.3 bits (102), Expect = 8e-17 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 ||||||||||||||||| |||||| ||||||||||| ||| | ||||||| ||||| Sbjct 135798 GGCGAACTGAAACATCTTAGTAGCAAGAGGAAAAGAAAGCAAAAGTGATTCCCGTAGTAG 135857 Query 228 TGGCGAGCGAAATGGGATGAGCCT 251 |||||||||||||||| ||||| Sbjct 135858 CGGCGAGCGAAATGGGAGCAGCCT 135881 >seq25267 Length=34998 Score = 89.7 bits (98), Expect = 9e-16 Identities = 86/109 (79%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| ||| || | | || || |||| |||||||||||| |||| |||||| | Sbjct 12321 TGCTGAATCCATGGGCAGGAAAGAGAGAACCAGGCGAACTGAAAGATCTTAGTAGCCAGA 12262 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 |||||||||| ||| | ||||| | ||||| |||| ||||||||||| Sbjct 12261 GGAAAAGAAAGCAAAAGTGATTCTCGTAGTAGCGGCGGGCGAAATGGGA 12213 >seq20518 Length=53034 Score = 87.8 bits (96), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 5/113 (4%) Strand=Plus/Plus Query 142 AATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAG--GA 198 ||| ||| || |||||| || ||| ||||||||||||||||| |||||| ||| || Sbjct 35998 AATTCATGGGCATGCAAGAGACAACCAGGCGAACTGAAACATCTTAGTAGC--CAGGAGA 36055 Query 199 AAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 ||||||| ||| | ||||||| ||||| ||||||| |||| ||| ||||| Sbjct 36056 AAAGAAAACAAAAGTGATTCCCGTAGTAGCGGCGAGCAAAATCGGAGCAGCCT 36108 >seq34285 Length=2838 Score = 86.0 bits (94), Expect = 1e-14 Identities = 84/107 (79%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 139 CTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197 |||||| ||| || | |||| || ||| |||||||||||||||| ||||| | || Sbjct 521 CTGAATCCATGGGCAGGCAAGAGACAACCTRGCGAACTGAAACATCTTAGTAG--GGAGA 578 Query 198 AAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 |||||||| || | ||||||| ||||| |||||||||||||||| Sbjct 579 AAAAGAAAGAAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGA 625 >seq17795 Length=46930 Score = 80.6 bits (88), Expect = 5e-13 Identities = 118/164 (72%), Gaps = 10/164 (6%) Strand=Plus/Minus Query 89 GATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACAT 148 ||||| ||||| ||| | |||||||| |||| ||||| || ||||| ||| Sbjct 13550 GATCCAGAGATTCTCGATTAGGGAAACCT-----TTTGA---ATTGC-TGTTGAATCCAT 13500 Query 149 AGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATC 207 || | | || || ||| || ||||||||||||| ||||||| ||||||||||| | Sbjct 13499 GGGCAAGAAAGAGACAACCTGGTCAACTGAAACATCTTAGTAGCTAGAGGAAAAGAAAGC 13440 Query 208 AACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 || | ||||||| ||||| ||| | | |||||| | ||||| Sbjct 13439 AAAAGTGATTCCCGTAGTAGCGGCAACCAAAATGGAAGAAGCCT 13396 >seq5271 Length=43039 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 15689 GCGAACTGAAACATCTTAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 15748 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 15749 GGCGAGCGAGAGCGGAT 15765 >seq1099 Length=146536 Score = 77.0 bits (84), Expect = 6e-12 Identities = 67/82 (82%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 163 AACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAA 222 ||| |||||||||||||||||| ||||| | ||||||||||| ||| | ||||||| Sbjct 113593 AACCCGGCGAACTGAAACATCTTAGTAGTTAGAGGAAAAGAAAGCAAAAGTGATTCCCGT 113652 Query 223 AGTAGTGGCGAGCGAAATGGGA 244 ||| || |||||| ||| |||| Sbjct 113653 AGT-GTTGCGAGCAAAACGGGA 113673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918005179840