Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq15766 187 8e-45 seq9967 176 2e-41 seq15907 152 2e-34 seq12817 141 3e-31 seq34285 131 6e-28 seq7518 120 1e-24 seq24933 116 1e-23 seq10896 98.7 3e-18 seq10450 98.7 3e-18 seq22705 89.7 2e-15 seq5338 84.2 7e-14 seq6255 80.6 9e-13 seq19389 78.8 3e-12 >seq15766 Length=8813 Score = 187 bits (206), Expect = 8e-45 Identities = 235/325 (72%), Gaps = 17/325 (5%) Strand=Plus/Plus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 ||||||||||||||||||| | | | || || | | |||||||||| ||||| | Sbjct 5847 CTCCCACCTATCCTACACATTCGGTTAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCA 5906 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| |||| | | ||||||| || | | ||||||||||| Sbjct 5907 CGGGGTCTTWCCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 5966 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 || | || |||||||| ||| ||||||||| ||||||||||||||| ||||| | Sbjct 5967 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCACTACTTATGC 6026 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| |||| |||||| ||||||||||| ||| |||| Sbjct 6027 GACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGRCTTC 6086 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 ||| || | | | ||| | |||| ||||||||||||||| Sbjct 6087 CATTCAAAGCTT---ATAACACTT-------------CTCCTTCCAACCTTCCAGCACCG 6130 Query 540 GGCAGGCGTCAGTCCGTATACCTCG 564 |||||| ||||| | ||||| ||| Sbjct 6131 GGCAGGTGTCAGACTCTATACATCG 6155 >seq9967 Length=59821 Score = 176 bits (194), Expect = 2e-41 Identities = 186/244 (76%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 ||||||||||||||||||| | | || || | | |||||||||| ||||| | Sbjct 8466 CTCCCACCTATCCTACACATTCGATTAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCA 8525 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| |||| | | ||||||| || | | ||||||||||| Sbjct 8526 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 8585 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 || | || |||||||| ||| ||||||||| |||||||||||||||| ||||| | Sbjct 8586 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 8645 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| |||| |||||| ||||||||||| || |||| Sbjct 8646 GACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCAGGACTTC 8705 Query 480 AATT 483 ||| Sbjct 8706 CATT 8709 >seq15907 Length=48904 Score = 152 bits (168), Expect = 2e-34 Identities = 181/244 (74%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 ||||||||||||||||||| | | || || | | |||||||||| ||||| | Sbjct 17133 CTCCCACCTATCCTACACATTCGATTAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCA 17192 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| |||| | | ||||||| || | | ||||||||||| Sbjct 17193 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 17252 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 || | || |||||||| ||| ||||||||| ||||||||| |||| ||||| | Sbjct 17253 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGTAGGTAACTACTTATGC 17312 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 || |||||||||||||||| ||||| |||| | |||| |||||||||| |||||||| Sbjct 17313 GATAAGGAATTTCGCTACCATAGGACAGTTACAATTACTGTCGCCGTTTACCGGGGCTTC 17372 Query 480 AATT 483 ||| Sbjct 17373 CATT 17376 >seq12817 Length=15233 Score = 141 bits (156), Expect = 3e-31 Identities = 111/130 (85%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | | ||||||| | || |||||||||| ||||||| ||||| Sbjct 4712 ATTTCACCGAGCCTCTCTTCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCG 4770 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| | Sbjct 4771 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGACTGCCGTTCA 4830 Query 470 CTGGGGCTTC 479 | |||||||| Sbjct 4831 CCGGGGCTTC 4840 >seq34285 Length=2838 Score = 131 bits (144), Expect = 6e-28 Identities = 325/485 (67%), Gaps = 12/485 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || |||| | || || Sbjct 2749 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTTGAGGGCCAATCTCC 2690 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 | | | |||| |||||||| |||||||||||| |||||||||| | || ||| || Sbjct 2689 GTCTGGACCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCTCAT 2631 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | | | | |||||||| || || || || |||||||| || || Sbjct 2630 AGAAACTGTCTAGCTGAGACTGTCCCTTGGCCCATAGGTCCTGATACAAGGTTAAAT-TC 2572 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCAT-CA 236 | | ||||||||||| ||| | | ||| || || | || || | | Sbjct 2571 TAGCCCTTCCAGAGTGGTATMTCACTGATGGCTCGGGCCCC-CTCGGAAGGAGGCCTTCT 2513 Query 237 TAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGAA 294 | || ||||||| | | || || || | || |||||| ||| | | | |||| Sbjct 2512 TCACCTTCCACCTAAGATGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAATGAA 2455 Query 295 GGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATT 353 | | | |||||||| ||| | || | | ||||||| || | | ||| Sbjct 2454 GCTTCATAGGGTCTTTCTGTCMAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATT 2395 Query 354 TCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAAC 413 |||||| |||| | ||||||| |||||||||| ||||| | ||||||||| Sbjct 2394 TCACCGAGCCTCTCTCCGAGACAGTGTCCATATCGTTACGCCTTTCGTACGGGTCGGAAC 2335 Query 414 TTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGG 473 |||| ||||||||||||||||||||||||||| ||||||||||| ||||| || | || Sbjct 2334 TTACTCGACAAGGAATTTCGCTACCTTAGGATCGTTATAGTTACGGCCGCCATTCGCCGG 2275 Query 474 GGCTT 478 ||||| Sbjct 2274 GGCTT 2270 >seq7518 Length=53158 Score = 120 bits (132), Expect = 1e-24 Identities = 149/203 (73%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 282 AAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTAC 340 |||||||||| ||||| | ||||||||| | | |||| | | ||||||| | Sbjct 2353 AAGCTATAGTTAAGGTTCACGGGGTCTTACCATATAGCCGTTGGTACTACGCATCTTCAT 2294 Query 341 TCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCG 400 | | ||||||||| | | | || ||||||| ||| ||||||| | ||||||| Sbjct 2293 GGAGAATTCAATTTCACTGTGTCCTTGTCGGAGACAGAGGGGCAGTCGTTGCACCATTCG 2234 Query 401 TGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCAC 460 ||||||||| ||||| |||||||||||| ||||||||||| |||| |||||| | Sbjct 2233 TGCAGGTCGCTACTTATGTGACAAGGAATTTTGCTACCTTAGGTCAGTTAGAGTTACTGC 2174 Query 461 CGCCGTTTACTGGGGCTTCAATT 483 || | ||||| |||||||| ||| Sbjct 2173 CGTCTTTTACGGGGGCTTCTATT 2151 >seq24933 Length=36177 Score = 116 bits (128), Expect = 1e-23 Identities = 146/199 (73%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 286 TATAGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGT 344 |||||| ||||| | ||||||||| |||| |||| | | ||||||| || Sbjct 6315 TATAGTTAAGGTGCACGGGGTCTTACCGTCTAGCCGTATGTACTCCGCATCTTCACGGAG 6256 Query 345 ACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCA 404 | | |||||||| || | || |||||| | ||| ||||||||| ||||||||||| Sbjct 6255 AATTTAATTTCACTAGGTCCATGTCGGAGACAACGGGGCAGTCGTTACACCATTCGTGCA 6196 Query 405 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCC 464 ||||| ||||| | | ||| |||||| ||||||||||| |||| |||||| || Sbjct 6195 GGTCGCTACTTATGCAAAAAGTAATTTCTCTACCTTAGGACAGTTAGAGTTACTGCCTTT 6136 Query 465 GTTTACTGGGGCTTCAATT 483 |||||| |||||||| ||| Sbjct 6135 GTTTACCGGGGCTTCCATT 6117 >seq10896 Length=62744 Score = 98.7 bits (108), Expect = 3e-18 Identities = 169/243 (70%), Gaps = 13/243 (5%) Strand=Plus/Plus Query 242 TCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-C 300 |||||||||||||||||| | | || || | |||||||||| ||||| | | Sbjct 35966 TCCCACCTATCCTACACAGTCAATTAAGGTTGTCACTGG-AAGCTATAGTTAAGGTGCAC 36024 Query 301 GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGG 360 | |||||| ||| || | | | |||| || || | | ||||||||| || Sbjct 36025 GAGGTCTTACCGTGTAGCTGTTGGTACTCCGCATTTTCACGGAGAATTCAATTTCACTGG 36084 Query 361 GCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCG 420 | | || | |||||| | ||| ||||||||| | ||| |||||| || |||||| || Sbjct 36085 GTCCATGTTGGAGACAACTGGGCAGTCGTTACAC-ATTTGTGCAGTTCTCTACTTACACG 36143 Query 421 ACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCA 480 |||||||||||||||||||||||| || |||| ||||||||||| ||| Sbjct 36144 ACAAGGAATTTCGCTACCTTAGGA----------CACTGCCGCAGTTTACTGGGGTTTCC 36193 Query 481 ATT 483 ||| Sbjct 36194 ATT 36196 >seq10450 Length=53292 Score = 98.7 bits (108), Expect = 3e-18 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||| | ||| || |||||||||||||||||||||| |||||||||||| Sbjct 49216 TCGTTACGCCTTTCATACAGATCTGAACTTACCCGACAAGGAATTTTTCTACCTTAGGAT 49275 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 |||||||||| | || | || || ||| |||| Sbjct 49276 CATTATAGTTACAAACGGCATTCACAGGGTCTTC 49309 >seq22705 Length=4646 Score = 89.7 bits (98), Expect = 2e-15 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 406 GTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCG 465 |||| |||||||| |||||||||||| |||||||||||| ||||||||||| |||||| Sbjct 260 GTCGAAACTTACCTGACAAGGAATTTTGCTACCTTAGGACCGTTATAGTTACGACCGCCA 201 Query 466 TTTACTGGGGCTTC 479 || || | |||||| Sbjct 200 TTCACCGTGGCTTC 187 >seq5338 Length=22153 Score = 84.2 bits (92), Expect = 7e-14 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||||||| | || |||| |||| |||||||||||| ||||||||||||| ||||||| Sbjct 20476 TCGTTACATCTTTTGTGCGGGTCAGAACTTACCCGATAAGGAATTTCGCTTTCTTAGGAC 20535 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||| | || || || | |||||| Sbjct 20536 CGTTATAGTTACTGCAACCATTCACCGAGGCTTC 20569 >seq6255 Length=82741 Score = 80.6 bits (88), Expect = 9e-13 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447 ||| || | || |||| | | ||||||||| |||||||||||||||||||||||| Sbjct 80629 GTTGCGTCTTTTGTGCGTTTTGAAACTTACCCAACAAGGAATTTCGCTACCTTAGGACCA 80688 Query 448 TTATAGTTACCACCGCCGT 466 |||||||||| |||||||| Sbjct 80689 TTATAGTTACAACCGCCGT 80707 >seq19389 Length=41817 Score = 78.8 bits (86), Expect = 3e-12 Identities = 101/139 (73%), Gaps = 6/139 (4%) Strand=Plus/Minus Query 422 CAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAA 481 ||||||||||||||||||||||| ||||||||||| ||||||| || |||||||| Sbjct 22538 CAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGTCGCCGTTCACCGGGGCTTCGR 22479 Query 482 TTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGG 541 | ||| ||| || || | | |||| | ||| ||||||| ||| ||| Sbjct 22478 -TCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTTCCGTCACTGGG 22425 Query 542 CAGGCGTCAGTCCGTATAC 560 |||||||||| || |||| Sbjct 22424 CAGGCGTCAGCCCACATAC 22406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701668138240