Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1896 113 1e-22 seq34284 111 3e-22 seq668 104 5e-20 seq13629 100 6e-19 seq7760 87.8 4e-15 seq15119 82.4 2e-13 seq10955 77.0 7e-12 >seq1896 Length=27352 Score = 113 bits (124), Expect = 1e-22 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 27106 CCTTCTTCRCTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 27047 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| | | ||||| || | ||| Sbjct 27046 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCYAGTGTGGCTGATCATCCGAA 26987 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 26986 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 26927 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 26926 GCAGGCTCATCAAACAGCG 26908 >seq34284 Length=5573 Score = 111 bits (122), Expect = 3e-22 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | | |||| | | ||| ||| ||||| | | ||| |||| || Sbjct 4265 AAAAGAAGTTCAYGACCCGTGGG-CSTTCTACCTCCACGCGGCATTGCTCCGTCAGKCTT 4207 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||| ||||||||||||||||||||| | ||||||| | Sbjct 4206 TCGCCCATTGCGGAAAATTCCCCACTACTGCCTCCCGTAGGAGTTTGGGCTGTGTCTCTG 4147 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| ||| ||| ||| | | || ||| || || Sbjct 4146 TCCCAGTGTGGCTGATCATCCTCTCGGAAGAGCTACTGATCATCGCCTTGGTAAGCTATT 4087 Query 261 ACCCCGCCTACTACCTAATGGAACGC-ATCCCC 292 || | || |||| ||||| |||| |||||| Sbjct 4086 GCCTCTCCAACTAGCTAATCAGACGCGATCCCC 4054 >seq668 Length=95767 Score = 104 bits (114), Expect = 5e-20 Identities = 105/133 (79%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTC-ACGCTACTTGGCTGGTTCAGACT 139 ||||||||||||| | || | || ||||| ||||| |||| || | ||| |||| || Sbjct 26771 AAAAGAAGTTTACGACCCAT-GAGCCTTCTACCTTCGACGCGACATTGCTCTGTCAGGCT 26713 Query 140 CTCG-TCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTC 198 ||| | ||||| || |||||||||||||||||| | ||||||| ||| ||||||||| Sbjct 26712 TTCGCTGCATTGCGAAAAATTCCTCACTGCTGCCTCTCATAGGAGTCTGGGCCGTGTCTC 26653 Query 199 AGTTCCAATGTGG 211 ||| ||| ||||| Sbjct 26652 AGTCCCAGTGTGG 26640 >seq13629 Length=19769 Score = 100 bits (110), Expect = 6e-19 Identities = 110/145 (76%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | || | | | ||| | | ||||| | | ||| |||| || Sbjct 146 AAAAGAAGTTCACGACCCATGGG-CATTCTACATCCACGCGGCATTGCTTCGTCAGGCTT 88 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||||||||||| ||| ||||||||||| Sbjct 87 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 28 Query 201 TTCCAATGTGGGGGACCTTCCTCTC 225 | ||| ||||| || | ||||||| Sbjct 27 TCCCAGTGTGGCTGATCATCCTCTC 3 >seq7760 Length=79283 Score = 87.8 bits (96), Expect = 4e-15 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| |||||| || ||||| || ||||||||||||||||||| ||| || Sbjct 65653 TCAGGCTTTCGCCCATTGCAGAAAATTCCCCATTGCTGCCTCCCGTAGGAGTCTGGGTCG 65712 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||||| ||| ||| ||||| || | |||||||||| Sbjct 65713 TGTCTTAGTCCCAGTGTGGCTGATCATCCTCTCAGA 65748 >seq15119 Length=56826 Score = 82.4 bits (90), Expect = 2e-13 Identities = 89/117 (76%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 80 TAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACT 139 ||||||||||| || | |||| | ||||| ||| ||||| || | ||| |||| || Sbjct 9031 TAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGCGACATTGCTCCGTCAGGCT 8973 Query 140 CTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTC 196 | | |||||| || ||||| |||||||||||||| |||||| ||| ||||||| Sbjct 8972 TTAGCCCATTGTGGAAAATTCCCCACTGCTGCCTCCCTCAGGAGTATGGGCCGTGTC 8916 >seq10955 Length=105951 Score = 77.0 bits (84), Expect = 7e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 132 TTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACC 191 ||||| || ||| |||||| || ||||| |||||||||||||||||||||| ||| || Sbjct 59877 TTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCC 59818 Query 192 GTGTCTCAGT 201 || ||||||| Sbjct 59817 GTATCTCAGT 59808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068340522880