Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq10080 95.1 2e-17 seq12586 91.5 2e-16 seq6726 82.4 1e-13 seq12587 80.6 4e-13 seq21516 75.2 2e-11 seq8601 73.4 6e-11 >seq10080 Length=16916 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||| || | ||| || ||| || |||| Sbjct 16620 GTACGAGAGGAACCGTTGA-TTCACAC-AATAGGCCATCGCGCTTGGTTGAAAAGCCAGT 16677 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | |||||||||||| | |||||||||||||||||||||| Sbjct 16678 GGCGCGAAGCTACCGTGTGCTGGATTATGACAGAACGCCTCTAAGTCAGAATCC 16731 >seq12586 Length=67103 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||| |||| || |||| | ||||||| | ||| || || || |||| Sbjct 47877 GTACGAGAGAAACCATTGA-TTCACA-TAATTGGCCATCGCGCTTGGTAGAAAAGCCAGT 47934 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||| | |||||||||||| |||||||||||||||||||||||| Sbjct 47935 GGCGCGAAGCTACTGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCC 47988 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| || |||| | |||||| | ||| ||| | | || |||| Sbjct 65771 GTACGAGAGGAACCATTGA-TTCACAC-AATTGGCCATCGCGCCTGGTTAAGAAGCCAGT 65828 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||| | | |||||||||||| |||||||||||||||| ||||||| Sbjct 65829 GGCGCGAAGCTATCGTGTGCTGGATTATGACTGAACGCCTCTAAGTTAGAATCC 65882 Score = 84.2 bits (92), Expect = 4e-14 Identities = 88/113 (78%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | |||||| | ||| || ||| || |||| Sbjct 9648 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGCCATCGCGCTTGGTTGAAAAGCCAGT 9705 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | | |||||||||| | | ||||||||| |||||||||||||||||||||| Sbjct 9706 GGCACGAAGCTACCTTGTTATGGATTATGAGTGAACGCCTCTAAGTCAGAATC 9758 Score = 78.8 bits (86), Expect = 2e-12 Identities = 86/112 (77%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||| ||||| || |||| | |||||| | ||| || ||| || || | Sbjct 32909 GTACGAGAGAAACCGTTGA-TTCACAC-AATTGGCCATCGCGTTTGGTTGAAAAGCCAAT 32966 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 | |||||||||||| | |||| ||||||| |||||| ||| ||||||||||| Sbjct 32967 GGCGCGAAGCTACCGTGTGCTCGATTATGACTGAACACCTTTAAGTCAGAAT 33018 >seq6726 Length=33565 Score = 82.4 bits (90), Expect = 1e-13 Identities = 87/113 (77%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| || |||| | |||||| | || || ||| || |||| Sbjct 1089 GTACGAGAGGAACCATTGA-TTCACAC-AATTGGCCATCRCGCTTGGTTGAAAAGCCAGT 1032 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||| | ||||||||| || ||||| |||||||||| |||||| Sbjct 1031 GGCGCGAAGCTACCGTGTGCTGGATTTTGACTGAATGCCTCTAAGTAAGAATC 979 >seq12587 Length=23565 Score = 80.6 bits (88), Expect = 4e-13 Identities = 93/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||| ||||| || |||| | ||||||| | | | || ||| | |||| Sbjct 21431 GTACGAGAGAAACCGTTGA-TTCACA-TAATTGGACATCGTGCTTGGATGAAAATCCAGT 21488 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | | |||||||| | |||||||||||| || ||||| ||||||||||||||| | || Sbjct 21489 GGCACAAAGCTACCGTGTGCTGGATTATGACTAAACGCGTCTAAGTCAGAATCCGGGTCA 21548 Query 121 GAA 123 ||| Sbjct 21549 GAA 21551 >seq21516 Length=48886 Score = 75.2 bits (82), Expect = 2e-11 Identities = 92/123 (75%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| |||||||||| || |||| | |||||| | ||| || ||| || ||| Sbjct 5583 GTACAAGAGGAACCGTTGA-TTCACAC-AATTGGCCATCGCGTTTGGGTGAAAAGCTAGT 5640 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | ||||||||||| || ||||||||| | ||||||||||||||| ||||| || | Sbjct 5641 GGCACGAAGCTACCAAATGTTGGATTATGAGTCAACGCCTCTAAGTCATAATCCGAGCTA 5700 Query 121 GAA 123 ||| Sbjct 5701 GAA 5703 >seq8601 Length=54180 Score = 73.4 bits (80), Expect = 6e-11 Identities = 79/102 (77%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 || |||||||||| | |||||| | ||||||| | ||| || ||| || |||| Sbjct 38447 GTGCGAGAGGAACTGTC-AATTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 38390 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCT 102 | |||||||||||| | |||||||||||| ||||| |||||| Sbjct 38389 GGCGCGAAGCTACCGTGTGCTGGATTATGACTGAAAGCCTCT 38348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818858831360