Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq728 183 2e-41 seq23166 84.2 2e-11 >seq728 Length=46982 Score = 183 bits (202), Expect = 2e-41 Identities = 581/885 (66%), Gaps = 18/885 (2%) Strand=Plus/Minus Query 61053 TCGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGG 61111 ||| ||| |||| |||||| || ||||| | |||||| |||||||| || || Sbjct 2833 TCGATTCTGTAT-GTTCCCAATTCAGTATCCACAGATTTGGGAAATGTACAAGAAAGCCA 2775 Query 61112 AAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC 61171 || || ||||||||||| || || |||||| | |||| || | | ||||||| Sbjct 2774 TGGCATCTTTCTGGACGGTAGAAGAAGTCGATCTCTCCACCGATACTCGTCACTGGGAAA 2715 Query 61172 GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGG 61231 || | ||||||| |||||||| | ||||| | || || ||||| || || | Sbjct 2714 ACCTAACATCCGGTGAAAGGCATTTCATCACTCATGTTCTTGCCTTTTTTGCTGCCTCAG 2655 Query 61232 ACGGTATCGTCAATGAGAATTTAT-TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAG 61290 |||| ||||| ||||| | ||||| ||| | | | || || || || | ||| Sbjct 2654 ACGGCATCGTTTTAGAGAACCTCGCTGGAAGGTT-CATGAAAGACGTCCAGGTTGCCGAG 2596 Query 61291 GCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGT 61350 | ||| |||||| || ||||| || ||||| |||||| |||| || |||||||||||| Sbjct 2595 GTTCGTGCTTTCTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGT 2536 Query 61351 GTTCTCATCGATACGTACATCAGGGAG-CGGGCGGAACGTGAACGATTGTTCAATGCCAT 61409 | || | || ||||||||| ||| | | || || | | | ||||||| ||| || Sbjct 2535 TTGCTGTTGGAGTCGTACATCAAGGATTCTGACGAAAAGAGCAA-ATTGTTCCGTGCGAT 2477 Query 61410 CGAGACGATACCG-GCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACCAGT 61467 ||||| || || | | |||| | || ||| | |||||| | ||||||| | || Sbjct 2476 TGAGACAATCCCTTGTGTTGAAAAG-AAGGCGAAATGGGCCCTTCGTTGGATCGATGGGT 2418 Query 61468 ACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527 | | || || | || || ||| |||| ||||| || || || | || ||| Sbjct 2417 CCGAA----ACCTTCGCGGAGCGTTTGGTGGCTTTTGCCTGTGTTGAAGGGATTTTCTTC 2362 Query 61528 AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587 || ||| || | || ||||||||||| ||||| || | ||||| || | ||| Sbjct 2361 AGCGGAAGCTTCTGTTCGATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACC 2302 Query 61588 TTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTA 61647 ||| |||||||| || ||| | ||||| || |||| ||||||||||| |||||| Sbjct 2301 TTCTCAAATGAGTTAATTTCAAGAGACGAAGGTTTGCACTGTGATTTTGCGTGTTTGCTT 2242 Query 61648 TTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAG 61707 | || | | || || | | |||||||| || | | |||||| || Sbjct 2241 TACA---GTTTGCTAAGGACGAAGCTAACTGAGGAGCGAGTCAGGGGAATTGTTGCAGAT 2185 Query 61708 GCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATG 61767 || || || ||| ||| || || ||| ||| | || | || | || ||| Sbjct 2184 GCTGTGGAGATAGAAAGGGAGTTCGTGTGTGATGCTCTTCCTTGTGCTCTGGTGGGAATG 2125 Query 61768 AATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTG 61827 ||| | | | ||| | || || || ||||| || ||| | |||||| | |||| Sbjct 2124 AATGGAGATTTGATGAGTAAATACATAGAGTTTGTAGCTGACAGATTGTTGGATGCTTTG 2065 Query 61828 GG-TATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCT 61886 || |||| | ||| || ||| | | || |||||||||| ||||| ||||| | Sbjct 2064 GGTTATG-ACAAGATGTACAATGCTCAGAATCCATTTGATTGGATGGAGCTGATTAGTTT 2006 Query 61887 GGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 | || ||||| ||||| || ||||| | || || || ||||| Sbjct 2005 ACAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCA 1961 >seq23166 Length=18651 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 65462 TAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGAT 65521 ||||| ||||| ||| || |||||| ||||| |||| || ||||||||| ||| || Sbjct 6293 TAGATATTGGATGTGTATGGCTCAAAGCATTCATTGTTTCCAAGAATTTGGCTAGTTGAA 6352 Query 65522 GCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555 ||||||||||| |||||||| | | |||||||| Sbjct 6353 GCAGTTGGCATTGGAGCGACAAGAAGTGAGTTTC 6386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397359697973600