Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq728 183 2e-41
seq23166 84.2 2e-11
>seq728
Length=46982
Score = 183 bits (202), Expect = 2e-41
Identities = 581/885 (66%), Gaps = 18/885 (2%)
Strand=Plus/Minus
Query 61053 TCGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGG 61111
||| ||| |||| |||||| || ||||| | |||||| |||||||| || ||
Sbjct 2833 TCGATTCTGTAT-GTTCCCAATTCAGTATCCACAGATTTGGGAAATGTACAAGAAAGCCA 2775
Query 61112 AAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC 61171
|| || ||||||||||| || || |||||| | |||| || | | |||||||
Sbjct 2774 TGGCATCTTTCTGGACGGTAGAAGAAGTCGATCTCTCCACCGATACTCGTCACTGGGAAA 2715
Query 61172 GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGG 61231
|| | ||||||| |||||||| | ||||| | || || ||||| || || |
Sbjct 2714 ACCTAACATCCGGTGAAAGGCATTTCATCACTCATGTTCTTGCCTTTTTTGCTGCCTCAG 2655
Query 61232 ACGGTATCGTCAATGAGAATTTAT-TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAG 61290
|||| ||||| ||||| | ||||| ||| | | | || || || || | |||
Sbjct 2654 ACGGCATCGTTTTAGAGAACCTCGCTGGAAGGTT-CATGAAAGACGTCCAGGTTGCCGAG 2596
Query 61291 GCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGT 61350
| ||| |||||| || ||||| || ||||| |||||| |||| || ||||||||||||
Sbjct 2595 GTTCGTGCTTTCTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGT 2536
Query 61351 GTTCTCATCGATACGTACATCAGGGAG-CGGGCGGAACGTGAACGATTGTTCAATGCCAT 61409
| || | || ||||||||| ||| | | || || | | | ||||||| ||| ||
Sbjct 2535 TTGCTGTTGGAGTCGTACATCAAGGATTCTGACGAAAAGAGCAA-ATTGTTCCGTGCGAT 2477
Query 61410 CGAGACGATACCG-GCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACCAGT 61467
||||| || || | | |||| | || ||| | |||||| | ||||||| | ||
Sbjct 2476 TGAGACAATCCCTTGTGTTGAAAAG-AAGGCGAAATGGGCCCTTCGTTGGATCGATGGGT 2418
Query 61468 ACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527
| | || || | || || ||| |||| ||||| || || || | || |||
Sbjct 2417 CCGAA----ACCTTCGCGGAGCGTTTGGTGGCTTTTGCCTGTGTTGAAGGGATTTTCTTC 2362
Query 61528 AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587
|| ||| || | || ||||||||||| ||||| || | ||||| || | |||
Sbjct 2361 AGCGGAAGCTTCTGTTCGATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACC 2302
Query 61588 TTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTA 61647
||| |||||||| || ||| | ||||| || |||| ||||||||||| ||||||
Sbjct 2301 TTCTCAAATGAGTTAATTTCAAGAGACGAAGGTTTGCACTGTGATTTTGCGTGTTTGCTT 2242
Query 61648 TTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAG 61707
| || | | || || | | |||||||| || | | |||||| ||
Sbjct 2241 TACA---GTTTGCTAAGGACGAAGCTAACTGAGGAGCGAGTCAGGGGAATTGTTGCAGAT 2185
Query 61708 GCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATG 61767
|| || || ||| ||| || || ||| ||| | || | || | || |||
Sbjct 2184 GCTGTGGAGATAGAAAGGGAGTTCGTGTGTGATGCTCTTCCTTGTGCTCTGGTGGGAATG 2125
Query 61768 AATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTG 61827
||| | | | ||| | || || || ||||| || ||| | |||||| | ||||
Sbjct 2124 AATGGAGATTTGATGAGTAAATACATAGAGTTTGTAGCTGACAGATTGTTGGATGCTTTG 2065
Query 61828 GG-TATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCT 61886
|| |||| | ||| || ||| | | || |||||||||| ||||| ||||| |
Sbjct 2064 GGTTATG-ACAAGATGTACAATGCTCAGAATCCATTTGATTGGATGGAGCTGATTAGTTT 2006
Query 61887 GGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931
| || ||||| ||||| || ||||| | || || || |||||
Sbjct 2005 ACAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCA 1961
>seq23166
Length=18651
Score = 84.2 bits (92), Expect = 2e-11
Identities = 75/94 (80%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 65462 TAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGAT 65521
||||| ||||| ||| || |||||| ||||| |||| || ||||||||| ||| ||
Sbjct 6293 TAGATATTGGATGTGTATGGCTCAAAGCATTCATTGTTTCCAAGAATTTGGCTAGTTGAA 6352
Query 65522 GCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555
||||||||||| |||||||| | | ||||||||
Sbjct 6353 GCAGTTGGCATTGGAGCGACAAGAAGTGAGTTTC 6386
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397359697973600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |