Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq3145 141 1e-31 seq1 141 1e-31 seq10 134 2e-29 seq11 114 2e-23 seq5 98.7 1e-18 seq2 98.7 1e-18 seq7 96.9 5e-18 seq3 93.3 6e-17 seq8 91.5 2e-16 seq9 86.0 9e-15 >seq3145 Length=155461 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 107520 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 107462 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 107461 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 107415 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 107414 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 107361 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 107360 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 107301 Query 246 GTA 248 ||| Sbjct 107300 GTA 107298 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 133818 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 133876 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 133877 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 133923 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 133924 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 133977 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 133978 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 134037 Query 246 GTA 248 ||| Sbjct 134038 GTA 134040 >seq1 Length=98543444 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 1902955 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 1902897 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 1902896 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 1902850 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 1902849 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 1902796 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 1902795 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 1902736 Query 246 GTA 248 ||| Sbjct 1902735 GTA 1902733 >seq10 Length=65527505 Score = 134 bits (148), Expect = 2e-29 Identities = 177/243 (73%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | | Sbjct 43887203 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCA 43887145 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 43887144 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 43887087 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 43887086 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 43887036 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | | | |||||| |||||| || |||| |||||||||| | Sbjct 43887035 TCGACATGGTTCTCTCAAGCACTCTAGTATACTCTACTTGTTCACCAGTGTCGGTTTGGG 43886976 Query 246 GTA 248 ||| Sbjct 43886975 GTA 43886973 >seq11 Length=56302525 Score = 114 bits (126), Expect = 2e-23 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 41640421 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 41640362 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 41640361 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 41640314 Score = 109 bits (120), Expect = 8e-22 Identities = 169/243 (70%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| |||||||||||| || ||||| | |||| | ||| | |||| Sbjct 32421924 CCTTCCGTCAGTGGGCAGGCGTCAACCCCCGTACATTGTCTTAT-GACTTTTCGGAGACC 32421866 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || ||||||| || | Sbjct 32421865 TGTGTTTTTGGTAAACAGTCGCCCGAGCCTGGTCACTGCGAC-------------ACCCT 32421819 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || | | ||||||||||||||||||||||| |||| |||||||||| ||||| Sbjct 32421818 TTGT------GAATAGGCACCCCTTCTCCCGAAGTTACAGGGCTATTTTGCCGAGTTCCT 32421765 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | ||| | ||| | ||| | ||||||||||| ||||||||||| |||| | Sbjct 32421764 TAGAGAGTGTTGTCTCGAGCCCCTAGGGATTCTCTACCTACCCACCTGTGTCAGTTTTGG 32421705 Query 246 GTA 248 ||| Sbjct 32421704 GTA 32421702 Score = 102 bits (112), Expect = 1e-19 Identities = 169/243 (70%), Gaps = 21/243 (9%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||| | ||| ||| ||||||||| | |||||| | ||||| | ||| || |||| Sbjct 13377785 CCTTTCGGCACTGGGAAGGCGTCAGCACCCATACATGGTCTTAC-GACTTTGCGGAGACC 13377727 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| ||||||| |||| || || | |||||| || Sbjct 13377726 TGTGTTTTTGGTAAACAATCGCCCGGGCCTGGTCAC-GCGACCCCCT------------- 13377681 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || |||||||||||||| |||||||||||| |||||||||||||||| Sbjct 13377680 TTGTG----AGGAG--GCACCCCTTCTCCCAAAGTTACGGGGCTATTTTGCCGAATTCCT 13377627 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| ||||| |||| |||| | Sbjct 13377626 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACACACCTATGTCAGTTTCGG 13377567 Query 246 GTA 248 ||| Sbjct 13377566 GTA 13377564 Score = 84.2 bits (92), Expect = 3e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCG 202 |||||||||||||||| |||||||| ||||||||||| |||||| || ||| | Sbjct 2191193 CACCCCTTCTCCCGAAATTACGGGGTCATTTTGCCGAGTTCCTTCGACATGATTCTCTGA 2191134 Query 203 AACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | |||| || ||| |||||| | ||||| ||||||||| |||| Sbjct 2191133 AGCGCCCTAATATACTCTACTTATTCACCTATGTCGGTTTGAGGTA 2191088 >seq5 Length=65875088 Score = 98.7 bits (108), Expect = 1e-18 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 ||||||||||||| ||| |||||||| ||||||||||| |||||| | || |||| | | Sbjct 30151384 GCACCCCTTCTCCTGAATTTACGGGGTCATTTTGCCGAGTTCCTTCAACATGGTTCTCTC 30151325 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | || |||||| |||||| || ||||||||| ||||| |||| Sbjct 30151324 AAGCACCCTAGTATACTCTACTTGTTCACCTGTGTTGGTTTTGGGTA 30151278 Score = 82.4 bits (90), Expect = 1e-13 Identities = 164/238 (69%), Gaps = 14/238 (6%) Strand=Plus/Minus Query 5 TCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGAC 64 |||||||| |||| ||||| |||| | |||| |||| ||||| ||| ||| | | Sbjct 26054219 TCCTTCCAGCACCCTGCAGGTGTCACACTCTATAAATCGTGTTACCA-CTTAGCAGAGTC 26054161 Query 65 CTGTGTTTTT-AGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACA 123 |||| ||||| | |||||| ||||| ||| || | | ||| | | | | |||| | Sbjct 26054160 CTGTTTTTTTTAATAAACAATCGCTACCCCCTGGTATGTGCCGCTTC-ATAA--TCAAAA 26054104 Query 124 CGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTC 183 | || | | |||||| ||||| | ||||||||||| ||||||||||| ||| Sbjct 26054103 GAT--------AGGA-TAGCACCCTTTCTCTCAAAGTTACGGGGTCATTTTGCCGAGTTC 26054053 Query 184 CTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||| || |||| | | ||| ||||| ||||| || ||||| |||||||| Sbjct 26054052 CTTGGACATGGTTCTCTTAAGTGCCCTAGTACAATCTACTTGTTCACCTATGTCGGTT 26053995 >seq2 Length=55340444 Score = 98.7 bits (108), Expect = 1e-18 Identities = 147/206 (71%), Gaps = 12/206 (6%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | |||||||| ||||| ||| ||| | || Sbjct 25896339 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCATGTTACC-ACTTAGCAGAGTCC 25896397 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| | |||| | | ||| | || |||| | Sbjct 25896398 CGTGTTTTTAATAAACAGTCGCTACTCTCTGGTATGTGCAGC--TTTCCTAATCAAAAGA 25896455 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | | || |||||||||||||||||||||||||| ||||||| ||| ||||| Sbjct 25896456 TGG-----GAG----AGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGTCGAGTTCCT 25896506 Query 186 TAACCACAGTTCACCCGAACGCCTTA 211 | | || |||| | | | |||| || Sbjct 25896507 TCAACATGGTTCTCTCAAGCGCCCTA 25896532 Score = 87.8 bits (96), Expect = 2e-15 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| ||||||| || |||||| | |||| | Sbjct 13794569 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCTGAGTTCCTTTGAGAGAGTTGTCT 13794628 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | ||| ||||||||||||| | |||||||| |||| |||| Sbjct 13794629 AGCGCCCCTAGGTATTCTCTACCTACCAACCTGTGTTAGTTTCGGGTA 13794676 >seq7 Length=68045021 Score = 96.9 bits (106), Expect = 5e-18 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||| ||| |||||||||| ||||||| | |||| | Sbjct 59468975 GGCACCCCTTCTCCCGAAGTTACGAGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 59468916 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| |||||||||||| |||| |||||| |||| |||| Sbjct 59468915 CGCGCCCCTAGTTATTCTCTACCTACCCACTTGTGTCAGTTTCGGGTA 59468868 Score = 91.5 bits (100), Expect = 2e-16 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||||||||||||||||||||||| ||||||||||| |||||| || |||| | | Sbjct 51340661 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTC 51340602 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACC 231 | |||| |||||| |||||| || |||| Sbjct 51340601 AAGCGCCCTAGTATACTCTACTTGTTCACC 51340572 >seq3 Length=70787664 Score = 93.3 bits (102), Expect = 6e-17 Identities = 168/243 (69%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| || ||| ||| ||||| | ||||||||| ||||| ||| | | || Sbjct 63703795 CCTTCCAGCATCGGATAGGTGTCAGACTCTATACATCGTGTTACCA-CTTATTAGAGTCC 63703737 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||| |||||| |||||| ||||| ||| | | | ||| | | | |||| | Sbjct 63703736 TGTATTTTTAATAAACATTCGCTACCCCCCGATATGTGCCTCTTTCCTAA--TCAAAAGA 63703679 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | | || | |||||||||| |||||||||||||| ||||||||||| ||||| Sbjct 63703678 TAGG-----AGAA----CACCCCTTCTACCGAAGTTACGGGGTCATTTTGCCGACTTCCT 63703628 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | ||| |||||| |||||| || ||| |||||||||| | Sbjct 63703627 TCGACATGGTTCTCTCAAGCGCTCTAGTATACTCTACTTGTTCACTAGTGTCGGTTTGAG 63703568 Query 246 GTA 248 ||| Sbjct 63703567 GTA 63703565 >seq8 Length=65866657 Score = 91.5 bits (100), Expect = 2e-16 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||| ||||| ||||| || ||||||| | |||| | Sbjct 46953374 GGCACCCCTTCTCCCGAAGTTATGGGGCTATTTTTTTGAGTTCCTTAGAGAGAGTTGTCT 46953315 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| ||||||||||| |||| |||| Sbjct 46953314 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCAGTTTCGGGTA 46953267 >seq9 Length=72482091 Score = 86.0 bits (94), Expect = 9e-15 Identities = 128/178 (72%), Gaps = 13/178 (7%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 69584491 CTTCCAGCACCGGGCAGGTGTCAGACTTTATACATCGTGTTACC-ACTTAGCAGAGTTCT 69584433 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 || |||||| |||||||||||| ||| || | | ||| | || |||| | | Sbjct 69584432 GTATTTTTAATAAACAGTCGCTACCCCCTGGTATGTGC--CGCTTTCCTAATCAAAAGAT 69584375 Query 127 CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCC 184 || || ||||||||||||||||||||||| || ||||||| ||| |||| Sbjct 69584374 --------AGAAG-AGCACCCCTTCTCCCGAAGTTACGAGGTCATTTTG-CGATTTCC 69584327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694378843585