Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq4 131 1e-28 seq3145 127 2e-27 seq1 127 2e-27 seq9 125 6e-27 seq11 118 9e-25 seq3 105 6e-21 seq10 100 2e-19 seq2 89.7 4e-16 seq12 86.0 5e-15 >seq4 Length=66470942 Score = 131 bits (144), Expect = 1e-28 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||||||| ||||||||| Sbjct 66450627 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 66450568 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| ||||||||| ||||||| |||| |||||||| ||| Sbjct 66450567 GATCGCGACCCTTTGTCCCGACCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 66450508 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 66450507 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 66450468 >seq3145 Length=155461 Score = 127 bits (140), Expect = 2e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||||||| ||||||||| Sbjct 103244 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 103185 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 103184 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 103125 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 103124 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 103085 Score = 127 bits (140), Expect = 2e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||||||| ||||||||| Sbjct 138094 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 138153 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 138154 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 138213 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 138214 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 138253 >seq1 Length=98543444 Score = 127 bits (140), Expect = 2e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||||||| ||||||||| Sbjct 1898679 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 1898620 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 1898619 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 1898560 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 1898559 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 1898520 Score = 86.0 bits (94), Expect = 5e-15 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||| |||| | ||| |||| ||||||| || |||||| Sbjct 23960673 CGAGTTGCAGCCTGCAATCAAAACTAAGGACGGGTTTTTGGGGTTAGCTCACCATCGCGG 23960732 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | | ||| ||| | |||||| ||||||| |||| |||||| | ||| Sbjct 23960733 GATCACCATCCTTTGTCCTGGCAATTGTAGCACGTGTGTCGCCCAGGGCATAAGAGACAT 23960792 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGG 153 || |||||| |||||||| ||||||||||||| Sbjct 23960793 GATGACTTGCCGTCATCCTCACCTTCCTCCGG 23960824 >seq9 Length=72482091 Score = 125 bits (138), Expect = 6e-27 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 ||||||||| || ||||||| ||| | ||| |||| ||||||| |||||||||| Sbjct 35461445 GAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGGG 35461386 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||| Sbjct 35461385 ATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCATG 35461326 Query 123 AGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||| ||||||||||||| || |||| Sbjct 35461325 ATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 35461287 Score = 89.7 bits (98), Expect = 4e-16 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 ||||||||| | ||||| |||| ||||||||||||||| |||||||||||||||||| Sbjct 51094706 CCATTGTATCATGTGTGTGGCCCAGCCCATAAGGGCCATGCAGACTTGACGTCATCCCCA 51094647 Query 143 CCTTCCTCCGGTTTGTCAC 161 || |||||| || | |||| Sbjct 51094646 CCGTCCTCCAGTATATCAC 51094628 Score = 75.2 bits (82), Expect = 9e-12 Identities = 116/161 (72%), Gaps = 5/161 (3%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGAT-ACAC-TTTCTGGGATTAGCTCCCCCTCGC 59 ||||||||| || |||||| | | ||| || ||| |||| ||||||| |||| || Sbjct 57187074 CGAGTTGCAACCTGCAATCCAAATT--GATGACGGGTTTTTGGGGTTAGCTCACCCT-GC 57187130 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 ||| | || |||| ||| | | ||||||| ||||||| ||| | |||||| | Sbjct 57187131 GGGATCTCGACCCTTTGTCTCAAAAATTGTATCACGTGTGCCGCCGAAGGCATAAGAAGC 57187190 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160 || |||| ||||||||| |||||||||||| || ||| Sbjct 57187191 ATAGTTACTTCACGTCATCCTCACCTTCCTCCGACTTATCA 57187231 >seq11 Length=56302525 Score = 118 bits (130), Expect = 9e-25 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 4 AGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGGT 63 |||||||| | ||||||| |||| || ||| |||| ||||||| |||||||||| Sbjct 32415147 AGTTGCAGCTTGCAATCCGAACTAAGAACGGTTTTTTGGGGTTAGCTCACCCTCGCGGGA 32415206 Query 64 TGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGA 123 | ||| || | ||| | ||||||| ||||||| ||||| ||||| || ||||| Sbjct 32415207 TCGCGACCTTTTGTCTCAGTCATTGTAGCACGTGTGTCGCCCTGGGCATAAAGGGCATGA 32415266 Query 124 GGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||| ||||||||||||| || |||| Sbjct 32415267 TGCCTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 32415304 Score = 114 bits (126), Expect = 1e-23 Identities = 121/158 (77%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 4 AGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGGT 63 ||||||||| |||||||| |||| | | ||||| || ||| ||||| ||| | | Sbjct 45337026 AGTTGCAGAGAACAATCCGAACTAAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAGCC 45337084 Query 64 TGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGA 123 | || ||| |||| | |||||||| ||||||| |||| ||||||||||||||| Sbjct 45337085 TTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATGC 45337144 Query 124 GGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||| ||||||||||||||| ||||||| || | |||| Sbjct 45337145 GGACCTGACGTCATCCCCACATTCCTCCAGTATATCAC 45337182 Score = 100 bits (110), Expect = 2e-19 Identities = 119/160 (74%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| || ||||||||||| || | |||| Sbjct 13373518 CGAGTTGCAGCCTGCAATCCGAACTGAGG-ACAGGTTTCGGGATTAGCTCACCTTTGCGG 13373460 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| ||| ||| |||||||| ||| ||| |||| || ||||| ||| Sbjct 13373459 GATCGCGATCCTTTGTCCCGGCCATTGTAGAACGCGTGTCGCCCAGGGCAGAAGGGGCAT 13373400 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||| || || || |||| Sbjct 13373399 GATGACTTGACGTCATCCTCACCTTCGTCTGGCTTATCAC 13373360 Score = 98.7 bits (108), Expect = 8e-19 Identities = 120/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||| | |||||||| ||| | | ||||| | ||| ||||| ||| | | Sbjct 49621797 CGAGTTGCAAAGAACAATCCGAACTGAGGCAATCTTTCCGA-ATTCGCTCCGCCTTACAG 49621739 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCC-ATAAGGGCCA 120 | || || |||| | |||||||| ||||||| |||| ||| |||||||||| Sbjct 49621738 CCTTGCTTCCTATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCCATAAGGGCCA 49621679 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || |||||||| ||||||||||||||||||| || | |||| Sbjct 49621678 TGCGGACTTGATGTCATCCCCACCTTCCTCCAGTATATCAC 49621638 Score = 93.3 bits (102), Expect = 4e-17 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| |||| ||||||| ||||||||| | | | |||| ||| | |||||| | ||| Sbjct 32420201 TTTTTGGGGTTAGCTCACCCTCGCGGTATTGTGACCCTTTGTCTCGGCCATTGCAGCACG 32420142 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 |||| |||| |||||||| ||||| ||| ||||||||||| |||||||||| | | Sbjct 32420141 TGTGTCGCCCAGGGCATAAGGGTCATGATGACCTGACGTCATCCTTACCTTCCTCCAGCT 32420082 Query 156 TGTCAC 161 | |||| Sbjct 32420081 TATCAC 32420076 Score = 86.0 bits (94), Expect = 5e-15 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 53 CCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCAT 112 |||||||||| | | | |||| | | | |||||||| ||||||| |||| ||| Sbjct 37007538 CCCTCGCGGGATAGAGACCCTTTTTCTCGGCCATTGTAGCACGTGTGTCGCCCAGGGCAT 37007597 Query 113 AAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTC 159 ||||| ||||| ||||||||||||||| |||||||||| || || || Sbjct 37007598 AAGGGGCATGATGACTTGACGTCATCCTCACCTTCCTCAGGCTTATC 37007644 Score = 77.0 bits (84), Expect = 3e-12 Identities = 88/117 (75%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 35 CTTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGAC 94 ||||||| ||| ||||| ||| | | || |||| |||| | |||||||| || Sbjct 23438704 CTTTCTGT-ATTCGCTCCGCCTTACAACCTTGCTTCCCTTTGTAATTGCCATTGTAGAAC 23438762 Query 95 GTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCC 151 || || |||| ||||||| ||||||| || |||||||||||||||| |||| ||| Sbjct 23438763 GTTTGTGGCCCAGCCCATAAAGGCCATGCGGTCTTGACGTCATCCCCAACTTCATCC 23438819 >seq3 Length=70787664 Score = 105 bits (116), Expect = 6e-21 Identities = 120/160 (75%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| | ||| ||||| ||| | | Sbjct 34594394 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCAG-ATTCGCTCCGCCTTACAG 34594452 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| ||| ||||||||||| || Sbjct 34594453 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGTCCCAGCCCATAAGGGCAAT 34594512 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||||||||||||||| || | |||| Sbjct 34594513 GCAGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 34594552 >seq10 Length=65527505 Score = 100 bits (110), Expect = 2e-19 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || |||||| | | | ||| ||| ||||||| ||||||||| Sbjct 39302311 CGAGTTGCAGCCTGCAATCCAAATTGAGGACGGGTTTTGGGGGTTAGCTCACCCTCGCGG 39302370 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || ||| ||| ||||||||| ||||||| |||| |||||||| ||| Sbjct 39302371 GATCACGACCCATTGTCCCGACCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 39302430 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTC 159 || |||||||| |||||| ||||||||||||| || || Sbjct 39302431 GATGACTTGACATCATCCTCACCTTCCTCCGGCTTATC 39302468 >seq2 Length=55340444 Score = 89.7 bits (98), Expect = 4e-16 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 93 ACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCG 152 ||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 46687480 ACGTGTGTGGCCCGGCCCATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCA 46687539 Query 153 GTTTGTCAC 161 || | |||| Sbjct 46687540 GTATATCAC 46687548 >seq12 Length=67145203 Score = 86.0 bits (94), Expect = 5e-15 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 75 TGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGT 134 |||| | |||||||| ||||||| |||| ||||||||||| |||| ||||||||||| Sbjct 37743085 TGTAATTGCCATTGTAGCACGTGTGTGGCCCAACCCATAAGGGTCATGTGGACTTGACGT 37743144 Query 135 CATCCCCACCTTCCTCC 151 |||||||| |||| ||| Sbjct 37743145 CATCCCCATCTTCTTCC 37743161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415987325650