Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 2e-18 seq22 93.3 7e-17 seq15 93.3 7e-17 seq7 93.3 7e-17 seq796 89.7 8e-16 seq31 89.7 8e-16 seq11 89.7 8e-16 seq9 86.0 1e-14 seq919 84.2 4e-14 seq51 84.2 4e-14 seq42 84.2 4e-14 seq110 77.0 5e-12 seq593 75.2 2e-11 >seq6 Length=49751636 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | |||||| | || || ||| || ||| Sbjct 11599503 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGCCATCACGCTTGGTTGAAAAGCTAGT 11599560 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| || ||||||||| |||||| |||||||||||||||||| || | Sbjct 11599561 GGCGCGAAGCTACCATGTGTTGGATTATGACTGAACTCCTCTAAGTCAGAATCCAGGCTA 11599620 Query 121 GAA 123 ||| Sbjct 11599621 GAA 11599623 Score = 96.9 bits (106), Expect = 6e-18 Identities = 90/112 (80%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| ||| ||| || |||| Sbjct 11233997 GTACGAGAGGAACCGTTGA-TTCACA-TAATTGGCCATCGCGCTTGTTTGAAAAGCCAGT 11233940 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 | || |||| |||| | ||||||||||| |||||||||||||||||||||| Sbjct 11233939 GGCGTGAAGATACCGTGTGCTGGATTATTACTGAACGCCTCTAAGTCAGAAT 11233888 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | |||||| | || || ||| || |||| Sbjct 11566852 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGCCATCACGCTTGGTTGAAAAGCCAGT 11566909 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||| |||||||| | |||||||||||| |||||| ||||||||||||||||| || | Sbjct 11566910 GGCGCAAAGCTACCGTGTGCTGGATTATGACTGAACTCCTCTAAGTCAGAATCCGGGCTA 11566969 Query 121 GAA 123 ||| Sbjct 11566970 GAA 11566972 Score = 80.6 bits (88), Expect = 4e-13 Identities = 93/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||| | | |||| || |||||| | ||| || ||| || ||| Sbjct 11200460 GTACGAGAGGAATCATTTA-TTCA-AACAATTGGCCATCGCGCTTGGTTGAAAAGCTAGT 11200403 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | || ||||||||| ||||| ||||||| || |||||||| || | Sbjct 11200402 GGCGCGAAGCTACCGTATGTTGGATTATGACTGAATGCCTCTACGTAAGAATCCAGGCTA 11200343 Query 121 GAA 123 ||| Sbjct 11200342 GAA 11200340 >seq22 Length=200883 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | |||||| | ||| || ||| || || | Sbjct 136018 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGCCATCGCGCTTGGTTGAAAAGCCAAT 135961 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||||| | ||| ||||||| ||||||||||||||||||||||||| || | Sbjct 135960 GGTGCGAAGCTACCGTGTGCGAGATTATGACTGAACGCCTCTAAGTCAGAATCCAGGCTA 135901 Query 121 GAA 123 ||| Sbjct 135900 GAA 135898 >seq15 Length=1579335 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | |||||| | ||| || |||| || ||| Sbjct 1498148 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGCCATCGCGCTTGGCTGAAAAGCTAGT 1498091 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||| ||| |||||| |||||||||||| |||||| | ||||||||| |||||| || | Sbjct 1498090 GGCGCAAAGATACCATGTGCTGGATTATGACTGAACACTTCTAAGTCATAATCCAGGCTA 1498031 Query 121 GAA 123 ||| Sbjct 1498030 GAA 1498028 Score = 84.2 bits (92), Expect = 4e-14 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||| |||||||| || |||| | ||||| | || || ||| || ||| Sbjct 40468 GTACGAAAGGAACCGTTGA-TTCACAC-AATTGTCCATCACGCTTGGTTGAAAAGCTAGT 40525 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||||||| ||||| |||||||||||||||| | || | Sbjct 40526 GGCGCGAAGCTACCATGTGCTGGATTATGACTGAATGCCTCTAAGTCAGAATGCGGGCTA 40585 Query 121 GAA 123 ||| Sbjct 40586 GAA 40588 Score = 84.2 bits (92), Expect = 4e-14 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | ||||| | |||||| | ||| || |||| || ||| Sbjct 1473505 GTACGAGAGGAACCGTTG-ATTCA-CACAATTGGCCATCGCGCTTGGCTGAAAAGCTAGT 1473448 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||| || |||||| |||||||| ||| |||||| | ||||||||| |||||| || | Sbjct 1473447 GGCGCAAAAATACCATGTGCTGGATCATGACTGAACACTTCTAAGTCATAATCCAGGCTA 1473388 Query 121 GAA 123 ||| Sbjct 1473387 GAA 1473385 >seq7 Length=68045021 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | |||||| | || || | | || |||| Sbjct 30150921 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGCCATCACGCTTGGTTAAAAAGCCAGT 30150864 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| | | |||||||||||| |||||||||||||||||||||||| || | Sbjct 30150863 GGCGCGAAGCTATCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 30150804 Query 121 GAA 123 ||| Sbjct 30150803 GAA 30150801 >seq796 Length=3818 Score = 89.7 bits (98), Expect = 8e-16 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | |||||| | | || ||| | |||| Sbjct 1006 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGCCATCATGCTTGGTTGAAAATCCAGT 1063 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||||||| |||||| ||||||||| ||||||| || | Sbjct 1064 GGCGCGAAGCTACCATGTGCTGGATTATGACTGAACTCCTCTAAGTTAGAATCCGGGCTA 1123 Query 121 GAA 123 ||| Sbjct 1124 GAA 1126 >seq31 Length=79909 Score = 89.7 bits (98), Expect = 8e-16 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| |||||||||| || |||| | |||||| | ||| || ||| || |||| Sbjct 24005 GTACAAGAGGAACCGTTGA-TTCACAC-AATTGGCCATCGCGCTTGGTTGAAAAGCCAGT 23948 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||||| | ||| |||||||| | |||||||||||||||||||||| || | Sbjct 23947 GGTGCGAAGCTACCGTGTGCGGGATTATGACCGAACGCCTCTAAGTCAGAATCCGGGCTA 23888 Query 121 GAA 123 ||| Sbjct 23887 GAA 23885 >seq11 Length=56302525 Score = 89.7 bits (98), Expect = 8e-16 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||| || || |||| | |||||| | || || ||| || |||| Sbjct 18594925 GTACGAGAGGAAACGTTGA-TTCACAC-AATTGGCCATCGCACTTGGTTGAAAAGCCAGT 18594868 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||||| | |||||||||||| ||||||||||||||||||||||| || | Sbjct 18594867 GGTGCGAAGCTACCGTGTGCTGGATTATGATTGAACGCCTCTAAGTCAGAATCCGGGCTA 18594808 Query 121 GAA 123 ||| Sbjct 18594807 GAA 18594805 Score = 84.2 bits (92), Expect = 4e-14 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||| | |||||| | ||| || ||| || |||| Sbjct 17873220 GTACGAGAGGAACTGTTGA-TTCACAC-AATTGGCCATCGCGCTTGGTTGAAAAGCCAGT 17873163 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||||| | ||| |||||||| |||| |||||||||||||||||| || | Sbjct 17873162 GGTGCGAAGCTACCGTGTGCGGGATTATGAATGAATGCCTCTAAGTCAGAATCCGGGCTA 17873103 Query 121 GAA 123 ||| Sbjct 17873102 GAA 17873100 Score = 80.6 bits (88), Expect = 4e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 || ||||| |||||||||||| | |||||||||||| |||||||||||||| ||||||| Sbjct 18734223 AGCCAGTGGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAATCAGAAT 18734165 Score = 78.8 bits (86), Expect = 2e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| ||||||||||| | |||||||||||| |||||||||||||| |||||||| Sbjct 18662193 AGCCAGTGGCGCGAAGCTACAGTGTGCTGGATTATGACTGAACGCCTCTAAATCAGAATC 18662134 Query 114 C 114 | Sbjct 18662133 C 18662133 Score = 75.2 bits (82), Expect = 2e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| ||||||||||| | |||||||||||| || ||||||||||| |||||||| Sbjct 18619141 AGCCAGTGGCGCGAAGCTACAGTGTGCTGGATTATGACTCAACGCCTCTAAATCAGAATC 18619082 Query 114 C 114 | Sbjct 18619081 C 18619081 Score = 73.4 bits (80), Expect = 6e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 ||||| ||||||||||| | |||||||||||| |||||||||| ||| ||||||||| Sbjct 18639670 CAGTGGAGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTTTAAATCAGAATCC 18639613 >seq9 Length=72482091 Score = 86.0 bits (94), Expect = 1e-14 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| |||||||||||| | |||||||||||| |||||||||||||| |||||||| Sbjct 4209788 AGCCAGTGGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAATCAGAATC 4209847 Query 114 CATGCCAGAA 123 | || |||| Sbjct 4209848 CGGGCTAGAA 4209857 >seq919 Length=3617 Score = 84.2 bits (92), Expect = 4e-14 Identities = 88/113 (78%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| || |||||| | || || ||| | ||| Sbjct 3337 GTACGAGAGGAACCGTTGA-TTCACAA-AATTGGCCATCACGCTTGGTTGAAAATCTAGT 3394 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||| |||||||||||| |||||| ||||||||| | |||| Sbjct 3395 GGCGCGAAGCTACCATGTGCTGGATTATGACTGAACTCCTCTAAGTTAAAATC 3447 >seq51 Length=36202 Score = 84.2 bits (92), Expect = 4e-14 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| || |||| | |||||| | ||| || ||| | |||| Sbjct 22440 GTATGAGAGGAACCGTTGA-TTCACAC-AATTGGCCATCGCGCTTGGTTGAAAATCCAGT 22383 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| | || |||||||| ||||||||||||||||||||||||| || | Sbjct 22382 GGTACGAAGCTACCGTGTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCCAGGCTA 22323 Query 121 GAA 123 ||| Sbjct 22322 GAA 22320 Score = 75.2 bits (82), Expect = 2e-11 Identities = 92/123 (75%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | |||||| | ||| || | | | ||| Sbjct 35536 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGCCATCGCGCTTGGTTTAAATGCAAGT 35479 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||| | | ||| |||||||| |||||||||| ||||||||||||| || | Sbjct 35478 GGTGCGAAGCTATCGTGTGCGGGATTATGACTGAACGCCTATAAGTCAGAATCCGGGCTA 35419 Query 121 GAA 123 ||| Sbjct 35418 GAA 35416 >seq42 Length=53154 Score = 84.2 bits (92), Expect = 4e-14 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | | |||| | ||| || ||| || || | Sbjct 12965 GTACGAGAGGAACCGTTGA-TTCACAC-ATTTGGCCATCGCGCTTGGTTGAAAAGCCAAT 13022 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||||| | ||| |||||||| |||| ||||||||||||||||||| || | Sbjct 13023 GTTGCGAAGCTACCGTGTGCGGGATTATGACTGAGCGCCTCTAAGTCAGAATCCGGGCTA 13082 Query 121 GAA 123 ||| Sbjct 13083 GAA 13085 >seq110 Length=12797 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||| | || |||| | |||||| | || || ||| || |||| Sbjct 5635 GTACGAGAGGAAATGTTGA-TTCACAC-AATTGGCCATCACGCTTGGTTGAAAAGCCAGT 5578 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | || ||||||||| | |||||||||||| || ||| ||||||||||||||||| Sbjct 5577 GGCGTGAAGCTACCGTGTGCTGGATTATGACTAAACTCCTCTAAGTCAGAATCC 5524 >seq593 Length=4237 Score = 75.2 bits (82), Expect = 2e-11 Identities = 92/123 (75%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| || |||| | ||||| | | | || ||| || |||| Sbjct 1629 GTAAGAGAGGAACCGTTGA-TTCACAC-AATTGTCCATCGGGCTTGGTTGAAAAGCCAGT 1686 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||||| | ||| |||||||| || ||||||||||||||||| ||| || | Sbjct 1687 GGTGCGAAGCTACCGTGTGCGGGATTATGACTTAACGCCTCTAAGTCAGATTCCGGGCTA 1746 Query 121 GAA 123 ||| Sbjct 1747 GAA 1749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819175041280