Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 183 2e-41 seq4 84.2 2e-11 >seq2 Length=55340444 Score = 183 bits (202), Expect = 2e-41 Identities = 581/885 (66%), Gaps = 18/885 (2%) Strand=Plus/Plus Query 61053 TCGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGG 61111 ||| ||| |||| |||||| || ||||| | |||||| |||||||| || || Sbjct 54781203 TCGATTCTGTAT-GTTCCCAATTCAGTATCCACAGATTTGGGAAATGTACAAGAAAGCCA 54781261 Query 61112 AAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC 61171 || || |||||||||| || || |||||| | |||| || | | ||||||| Sbjct 54781262 TGGCATCTTTCTGGACGGCAGAAGAAGTCGATCTCTCCACCGATACTCGTCACTGGGAAA 54781321 Query 61172 GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGG 61231 || | ||||||| |||||||| | ||||| | || || |||||||| || | Sbjct 54781322 ACCTAACATCCGGTGAAAGGCATTTCATCACTCATGTTCTTGCCTTTTTTGCCGCCTCAG 54781381 Query 61232 ACGGTATCGTCAATGAGAATTTAT-TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAG 61290 |||| ||||| ||||| | ||||| ||| | | | || || || || | ||| Sbjct 54781382 ACGGCATCGTTTTAGAGAACCTCGCTGGAAGGTT-CATGAAAGATGTCCAGGTTGCCGAG 54781440 Query 61291 GCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGT 61350 || ||| |||||| || ||||| || ||||| |||||| |||| || |||||||||||| Sbjct 54781441 GCTCGTGCTTTCTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGT 54781500 Query 61351 GTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCAT 61409 | || | || ||||||||| ||| | | || || | | | ||||||| ||| || Sbjct 54781501 TTGCTGTTGGAGTCGTACATCAAGGATTCTGACGAAAAGAGCA-AATTGTTCCGTGCAAT 54781559 Query 61410 CGAGACGATACC-GGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACCAGT 61467 ||||| || || | | |||| ||| ||| | |||||| | ||||||| | || Sbjct 54781560 TGAGACAATCCCTTGTGTTGAA-AAGAAGGCGAAATGGGCCCTTCGTTGGATCGATGGGT 54781618 Query 61468 ACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527 | | || || | || || ||| |||| ||||| || || || | || ||| Sbjct 54781619 ----CCGAAACTTTCGCGGAGCGTTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTC 54781674 Query 61528 AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587 || ||| || | || ||||||||||| ||||| || | ||||| || | ||| Sbjct 54781675 AGCGGAAGCTTCTGTTCGATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACC 54781734 Query 61588 TTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTA 61647 ||| |||||||| || ||| | ||||| || |||| ||||||||||| |||||| Sbjct 54781735 TTCTCAAATGAGTTAATTTCAAGAGACGAAGGTTTGCACTGTGATTTTGCGTGTTTGCTT 54781794 Query 61648 TTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAG 61707 | || | | || || | | |||||||| || | | |||||| || Sbjct 54781795 TACA---GTTTGCTAAGGACGAAGCTAACTGAGGAGCGAGTCAGGGGAATTGTTGCAGAT 54781851 Query 61708 GCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATG 61767 || || || ||| ||| || || ||| ||| | || | || | || ||| Sbjct 54781852 GCTGTGGAGATAGAAAGGGAGTTCGTGTGTGATGCTCTTCCTTGTGCTCTGGTGGGAATG 54781911 Query 61768 AATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTG 61827 ||| | | | ||| | || || || ||||| || ||| | |||||| | |||| Sbjct 54781912 AATGGAGATTTGATGAGTAAATACATAGAGTTTGTAGCTGACAGATTGTTGGATGCTTTG 54781971 Query 61828 GG-TATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCT 61886 || |||| | ||| || ||| | | || ||||| |||| ||||| ||||| | Sbjct 54781972 GGTTATG-ACAAGATGTACAATGCTCAGAATCCATTCGATTGGATGGAGCTGATTAGTTT 54782030 Query 61887 GGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 | || ||||| ||||| || ||||| | || || || ||||| Sbjct 54782031 ACAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCA 54782075 >seq4 Length=66470942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 65462 TAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGAT 65521 ||||| ||||| ||| ||||||||| ||||| |||| || ||||||||| ||| || Sbjct 4385717 TAGATATTGGATGTGTATGGTTCAAAGCATTCATTGTTTCCAAGAATTTGGCTAGTTGAA 4385776 Query 65522 GCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555 ||||||||||| ||||| || | | |||||||| Sbjct 4385777 GCAGTTGGCATTGGAGCTACAAGAAGTGAGTTTC 4385810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397552761342800