Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30]
33,873 sequences; 833,080,760 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq20210 107 1e-21
seq23045 100 2e-19
seq26693 98.7 6e-19
seq26536 80.6 1e-13
seq10560 77.0 2e-12
>seq20210
Length=53406
Score = 107 bits (118), Expect = 1e-21
Identities = 94/117 (80%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| |||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 22271 GAACCCAAAAACTTTGATTTCTTATAAGGTGCCGGTGGAGTCCTAAAAGCAACATCCGCC 22212
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||| ||| |||| |||| |||||| || |||||||||||||||| ||
Sbjct 22211 GATCCCTGGTCGACATTATTTATGGTTGAGACTAGGATGGTATCTGATCGTCTTTGA 22155
>seq23045
Length=54208
Score = 100 bits (110), Expect = 2e-19
Identities = 91/115 (79%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||| || |||||| |||||||||| ||| | || |||||| |
Sbjct 14184 GAACCCAAAAACTCTGTTTTCTCATAAGGTGCCGGCAGAGCCCTAAAAGCAACATCCGTC 14243
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115
||||||| |||| ||| |||| |||| |||||| ||||||||||||||||||||
Sbjct 14244 GATCCCTGGTCGACATCATTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTC 14298
>seq26693
Length=159755
Score = 98.7 bits (108), Expect = 6e-19
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||| ||||||||| |||||||| | ||||| || |||||| |
Sbjct 159041 GAACCCAAAAACTCTGATTTCTCATAAGGTGCTGGCAGAGTCCTAAAAGCAACATCCGTC 159100
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTT 114
||||||| |||| ||| |||| |||| |||||| ||||||||||||||||||
Sbjct 159101 GATCCCTGGTCGACATCATTTATGGTTGAGACTAGAACGGTATCTGATCGTCTT 159154
>seq26536
Length=152591
Score = 80.6 bits (88), Expect = 1e-13
Identities = 88/117 (75%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||| ||||| ||||| ||||||| |||||||| ||||| || ||||| |
Sbjct 103349 GAATCCAAAAACTTTAATTTCTCATAAGGTGCTAGTGGAGTCCTAAAAGCAACATTTGTC 103290
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| ||||| | ||||| ||| |||| || || ||||||||||| |||||||
Sbjct 103289 GATCCCTGATCGGCGTCGTTTATGGTAAAGATTAGGATGGTATCTGATCATCTTCGA 103233
>seq10560
Length=10975
Score = 77.0 bits (84), Expect = 2e-12
Identities = 72/92 (78%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61
|||| ||| ||||||||||||| |||||||| | ||||| || ||||||| | |
Sbjct 1476 AACCTAAAAACTTTGATTTCTCATAAGGTGCTGGCGGAGTCCTAAAAGTAACATCCGCTG 1535
Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACT 93
|||||| |||| ||| ||||| |||| |||||
Sbjct 1536 ATCCCTGGTCGACATCGTTTATGGTTGAGACT 1567
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278311591470
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |