Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_033276.1 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq19028 257 3e-65 >seq19028 Length=31091 Score = 257 bits (284), Expect = 3e-65 Identities = 297/399 (74%), Gaps = 1/399 (0%) Strand=Plus/Plus Query 1605 GCATTTTTTAAAGCCCAATTTTTGAGTGCAGAATTCTTCTCCTCGTCCAGATACTCTTTA 1664 ||||| | |||| ||||||||| | | | ||| || ||||| || || |||||||| Sbjct 13795 GCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTA 13854 Query 1665 TAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATATGA 1724 ||||||||| | || || |||||||| | |||||| || || || || || || || | Sbjct 13855 TAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTT 13914 Query 1725 ACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTG 1784 || ||| |||||||||| ||||| ||| | |||||||||||||| || ||||| Sbjct 13915 ACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTTA 13974 Query 1785 AAGTGTTTTAGATAATGCGGATCGACGTCATCAATGACGTTGTACCAGGCCTCATTACTG 1844 ||||| |||||||||||||||||||||| |||||||| ||| |||||||| | ||| Sbjct 13975 AAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGAA 14034 Query 1845 TAGACCTTTGGACTAAGGTCTAAGTGACCACACAAATAATTATGTGGACCCAGTGACCTA 1904 || | || | | | ||||| ||||| || | ||||||||||| || | || || Sbjct 14035 TAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTT 14094 Query 1905 GCCCACATTGTCTTCCCCGTACGACTATCACCTTCTATCACTATACTTATGGGTC-TCAA 1963 |||||| ||||||||| || | | ||||| || || || ||||| |||||| | || Sbjct 14095 GCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAA 14154 Query 1964 TGGCCGCGCAGCGGAACCCACCACGTTCTCAGCAGCCCA 2002 |||||||||||||| | || || || ||||| ||||| Sbjct 14155 TGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCA 14193 Score = 118 bits (130), Expect = 2e-23 Identities = 353/539 (65%), Gaps = 33/539 (6%) Strand=Plus/Plus Query 948 GAATCATAGTGAGAATGCGTTAATGTTGTATATGGCGTGTACTCATGCCGCTAATCCAGT 1007 || ||||| ||| ||||| || ||||||||| | |||||||| ||||||| || Sbjct 13080 GACTCATACTGAAAATGCATT---GTTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1008 GTATGCTACTTTGAAGATACGGATCTACTTCTATGATTCCGTGACAAGTTAATAAATATT 1067 ||| |||| ||| | ||| | || || ||||| || ||| |||||||||||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1068 GAATTTTA-TTGAAGATGATTGGTCTACATATACAATATGCTCTAATACATTCCATAATA 1126 |||||||| || | ||| ||| ||||| || | ||||| | |||||| |||||| Sbjct 13197 GAATTTTATTTCATGAT-ATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATA 13255 Query 1127 CATGATCAACTGCCCTAACTACATTATTAATACTGACAATCCCTAAGTTATTTAAATACT 1186 ||| || || || |||| | ||| |||||||| | || ||||| | |||| | | Sbjct 13256 CATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATT 13315 Query 1187 TAAGCACTTGGGTCTTAAAGACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCATCC 1246 | | || | ||||| || ||||||||| |||||||| || | ||| Sbjct 13316 TCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCC 13375 Query 1247 AGATTCGGAAGGCTAGGAAACATTTGTGTATCCCCAACGCTTTCCGCAGGTTGTGATTGA 1306 ||| |||| |||||| |||||| | || | |||| ||||||||| |||| Sbjct 13376 TGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGA 13435 Query 1307 ACTGTATCTGGACAGTGATGATGTC-GTGGTTCATGTTGAGTGGCCTG---TTGTGGTGC 1362 | | || || | ||| ||||| || || | ||| ||| ||| ||||||| Sbjct 13436 ATCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTG-TTGGTCTGAGATTGTGGT-- 13492 Query 1363 TCTGTTATCTTGAAATAGAG-GGGAGTTTGAATCTCCCAGATA----------------- 1404 | | ||||||||||| || || | || ||||| ||| Sbjct 13493 TGAG-GATCTTGAAATATAGAAACAGCTAATATTTCCCAAATATGTGGTTGACGTAAACG 13551 Query 1405 --TACACGCCATTCTCTGCTTGAGCTGCAGTGATGGATTCCCCTGTGCGTGAATCCATG 1461 || ||||||||| ||||| ||||||||| |||||||||||||| ||||||| Sbjct 13552 ACTAGACGCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATCCATG 13610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8688072031688