Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq6 82.4 1e-13 seq2 82.4 1e-13 seq7 78.8 2e-12 >seq6 Length=60730942 Score = 82.4 bits (90), Expect = 1e-13 Identities = 208/309 (67%), Gaps = 8/309 (3%) Strand=Plus/Plus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATT-CG 70 |||| |||||||||| | |||| ||| || ||||| || |||| ||| | | Sbjct 39223443 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAG--GAGCCAGGGCT 39223500 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||| |||||||| ||| | |||||||| ||| | | | | || || |||||||| Sbjct 39223501 CTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGG 39223559 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 39223560 GAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTA 39223615 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | ||| Sbjct 39223616 TGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGG 39223675 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| |||||||| | |||||| | | ||||||| | | || ||||||||||| || Sbjct 39223676 AGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGC 39223735 Query 311 CAATCAAAC 319 || || ||| Sbjct 39223736 CACTCGAAC 39223744 >seq2 Length=59803892 Score = 82.4 bits (90), Expect = 1e-13 Identities = 208/309 (67%), Gaps = 8/309 (3%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATT-CG 70 |||| |||||||||| | |||| ||| || ||||| || |||| ||| | | Sbjct 27514932 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAG--GAGCCAGGGCT 27514875 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||| |||||||| ||| | |||||||| ||| | | | | || || |||||||| Sbjct 27514874 CTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGG 27514816 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 27514815 GAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTA 27514760 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | ||| Sbjct 27514759 TGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGG 27514700 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| |||||||| | |||||| | | ||||||| | | || ||||||||||| || Sbjct 27514699 AGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGC 27514640 Query 311 CAATCAAAC 319 || || ||| Sbjct 27514639 CACTCGAAC 27514631 >seq7 Length=79292169 Score = 78.8 bits (86), Expect = 2e-12 Identities = 95/128 (74%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 208 GATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGAGGACCGAACCGGTAA 266 |||||| ||| ||||||||||||| || |||| | ||||||||||||| | Sbjct 4543376 GATCTAGCCAAGAGCAGGTTGAAGAAAGCTCTAACAGGCCTTGGAGGACCGAACTCACAT 4543317 Query 267 ACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAA 326 | || | ||| | |||||||| | || ||||||||||||||||||||| | ||| | Sbjct 4543316 ATGTGGCAAATTACAGGGATGACTTGTGGCTAGGGGTGAAAGGCCAATCAAGATCGGATA 4543257 Query 327 TAGCTCGT 334 ||||| || Sbjct 4543256 TAGCTGGT 4543249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972799883264