Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11]
12 sequences; 926,426,464 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq7 131 9e-29
seq6 131 9e-29
seq11 111 9e-23
seq10 95.1 7e-18
seq12 75.2 6e-12
>seq7
Length=79292169
Score = 131 bits (144), Expect = 9e-29
Identities = 99/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 17553569 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 17553510
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 17553509 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 17553453
Score = 131 bits (144), Expect = 9e-29
Identities = 99/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 17631759 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 17631700
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 17631699 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 17631643
Score = 125 bits (138), Expect = 4e-27
Identities = 98/117 (84%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||||| ||||| || |||| | ||
Sbjct 17634893 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACAACCGCC 17634834
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 17634833 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 17634777
Score = 125 bits (138), Expect = 4e-27
Identities = 98/117 (84%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||||| || || || |||||| ||
Sbjct 17656924 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGATTCCTAAAAGCAACATCCGCC 17656865
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 17656864 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 17656808
Score = 116 bits (128), Expect = 2e-24
Identities = 99/118 (84%), Gaps = 3/118 (3%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| |||||||||| | || |||||| |||| |||| || |||||| |
Sbjct 17531065 GAACCCAAAAACTTTGATTTTTTATA-GGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 17531008
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 17531007 CGATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 17530950
Score = 116 bits (128), Expect = 2e-24
Identities = 96/117 (82%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||| ||||||| |||||||||| ||||| || |||||| |
Sbjct 17560260 GAACCCAAAAACTTTTATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCT 17560201
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| || |||||||||||||||||||
Sbjct 17560200 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGAAGGTATCTGATCGTCTTCGA 17560144
Score = 113 bits (124), Expect = 3e-23
Identities = 98/118 (83%), Gaps = 3/118 (3%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA-AAATGATAACATCGCC 59
||||||||| || |||||||||| |||||||| | ||||| ||| || |||||| |
Sbjct 17599505 GAACCCAAAAACATTGATTTCTCATAAGGTGCAGGCGGAGTCCTAAAAGA-AACATCCGC 17599447
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||| |||||||| ||| | |||| |||||| |||||||||| |||||||||||
Sbjct 17599446 CGATCCCTGGTCGGCATCGTT-ATGGTTGAGACTAGGACGGTATCTAATCGTCTTCGA 17599390
Score = 107 bits (118), Expect = 1e-21
Identities = 94/117 (80%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||| ||||||| |||||||||| ||||| || ||||| ||
Sbjct 17578048 GAACCCAAAAACTTTTATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATTCGCC 17577989
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||| | ||||| |||| |||||| || |||| ||||||||||||||
Sbjct 17577988 GATCCCTGGTCGGCGTCGTTTATGGTTGAGACTAGGAAGGTACCTGATCGTCTTCGA 17577932
Score = 100 bits (110), Expect = 2e-19
Identities = 92/117 (79%), Gaps = 7/117 (6%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 17672396 GAACCCAAACACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCAGCC 17672337
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| ||| | |||||||||||||||||
Sbjct 17672336 GATCCCTGGTCGGCATCGTTTATGGTTGAGA-------GTTATCTGATCGTCTTCGA 17672287
Score = 91.5 bits (100), Expect = 8e-17
Identities = 91/117 (78%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|||| |||| | |||||||||| |||||||| | ||||| || | |||| |
Sbjct 17596002 GAACGCAAAATCATTGATTTCTCATAAGGTGCAGGCGGAGTCCTAAAAGCAGCATCCGTC 17595943
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||| | |||| |||||| |||||||||| |||||||||||
Sbjct 17595942 GATCCCTGGTCGGCATTGTT-ATGGTTGAGACTAGGACGGTATCTTATCGTCTTCGA 17595887
>seq6
Length=60730942
Score = 131 bits (144), Expect = 9e-29
Identities = 99/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 25717238 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 25717297
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 25717298 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 25717354
Score = 77.0 bits (84), Expect = 2e-12
Identities = 91/118 (77%), Gaps = 4/118 (3%)
Strand=Plus/Minus
Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGA-GTCA-AAATGATAACATCGCC 59
|||||||| || ||| ||| | |||||||||| |||| ||| ||| || |||||
Sbjct 10199623 AACCCAAAAACATTGTTTTGTAATAAGGTGCCG-GCGAAGTCCTAAAAGA-AACATTTGT 10199566
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||| || | |||| ||| ||||| |||| ||| || || | |||||||||||||||||
Sbjct 10199565 CGACCCGTGGTCGTCATCGTTTATGGTTGAGATTAGGATGATATCTGATCGTCTTCGA 10199508
Score = 75.2 bits (82), Expect = 6e-12
Identities = 70/89 (79%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 6 CAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCC 65
|||| ||||||||||||| ||||||| || ||||| || |||||| | |||||
Sbjct 5131324 CAAAAACTTTGATTTCTCATAAGGTGTCGGCGGAGTCCTAAAAGCAACATCCGCGGATCC 5131383
Query 66 CTAGTCGGCATAGTTTACGGTTAAGACTA 94
|| |||||||| ||||| |||| ||||||
Sbjct 5131384 CTGGTCGGCATCGTTTATGGTTGAGACTA 5131412
>seq11
Length=66223686
Score = 111 bits (122), Expect = 9e-23
Identities = 97/118 (82%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| | ||||||||||| ||||||||| |||| |||| || ||||| |
Sbjct 19693311 GAACCCAAAAATTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATTCGC 19693253
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||| | |||| ||| ||||| ||||||||||| |||| |||||||||||||||||
Sbjct 19693252 CGATCCATGGTCGACATCGTTTATGGTTAAGACTAGGACGATATCTGATCGTCTTCGA 19693195
>seq10
Length=82529941
Score = 95.1 bits (104), Expect = 7e-18
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 13 TTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCG 72
||||||||||| |||| ||||| ||||| || |||||| |||||||| |||
Sbjct 65673423 TTTGATTTCTCATAAGTTGCCGGCGGAGTCCTAAAAGCAACATCCGTCGATCCCTGCTCG 65673364
Query 73 GCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||| ||||| |||| |||||| || |||||||||||||||||||
Sbjct 65673363 GCATCGTTTATGGTTGAGACTAGGAAGGTATCTGATCGTCTTCGA 65673319
>seq12
Length=83305730
Score = 75.2 bits (82), Expect = 6e-12
Identities = 86/116 (74%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61
|||||||| ||| ||||||| |||||||| | ||||| || ||||| |||
Sbjct 65054193 AACCCAAAATTTTTTATTTCTCATAAGGTGCAGGCGGAGTCCTAAAAGCAACATTCGCCG 65054134
Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||| | ||| ||| |||| |||| | |||| |||| |||||||||||||| ||
Sbjct 65054133 ATCCATGGTCATCATCATTTATGGTTGAAACTAGGACGATATCTGATCGTCTTTGA 65054078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278399968680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |