Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq7 131 9e-29 seq6 131 9e-29 seq11 111 9e-23 seq10 95.1 7e-18 seq12 75.2 6e-12 >seq7 Length=79292169 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 17553569 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 17553510 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 17553509 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 17553453 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 17631759 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 17631700 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 17631699 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 17631643 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||| | || Sbjct 17634893 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACAACCGCC 17634834 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 17634833 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 17634777 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| || || || |||||| || Sbjct 17656924 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGATTCCTAAAAGCAACATCCGCC 17656865 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 17656864 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 17656808 Score = 116 bits (128), Expect = 2e-24 Identities = 99/118 (84%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 ||||||||| |||||||||| | || |||||| |||| |||| || |||||| | Sbjct 17531065 GAACCCAAAAACTTTGATTTTTTATA-GGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 17531008 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 17531007 CGATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 17530950 Score = 116 bits (128), Expect = 2e-24 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||| ||||||| |||||||||| ||||| || |||||| | Sbjct 17560260 GAACCCAAAAACTTTTATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCT 17560201 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| || ||||||||||||||||||| Sbjct 17560200 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGAAGGTATCTGATCGTCTTCGA 17560144 Score = 113 bits (124), Expect = 3e-23 Identities = 98/118 (83%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA-AAATGATAACATCGCC 59 ||||||||| || |||||||||| |||||||| | ||||| ||| || |||||| | Sbjct 17599505 GAACCCAAAAACATTGATTTCTCATAAGGTGCAGGCGGAGTCCTAAAAGA-AACATCCGC 17599447 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||| |||||||| ||| | |||| |||||| |||||||||| ||||||||||| Sbjct 17599446 CGATCCCTGGTCGGCATCGTT-ATGGTTGAGACTAGGACGGTATCTAATCGTCTTCGA 17599390 Score = 107 bits (118), Expect = 1e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||| ||||||| |||||||||| ||||| || ||||| || Sbjct 17578048 GAACCCAAAAACTTTTATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATTCGCC 17577989 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||| | ||||| |||| |||||| || |||| |||||||||||||| Sbjct 17577988 GATCCCTGGTCGGCGTCGTTTATGGTTGAGACTAGGAAGGTACCTGATCGTCTTCGA 17577932 Score = 100 bits (110), Expect = 2e-19 Identities = 92/117 (79%), Gaps = 7/117 (6%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 17672396 GAACCCAAACACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCAGCC 17672337 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| ||| | ||||||||||||||||| Sbjct 17672336 GATCCCTGGTCGGCATCGTTTATGGTTGAGA-------GTTATCTGATCGTCTTCGA 17672287 Score = 91.5 bits (100), Expect = 8e-17 Identities = 91/117 (78%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||| |||| | |||||||||| |||||||| | ||||| || | |||| | Sbjct 17596002 GAACGCAAAATCATTGATTTCTCATAAGGTGCAGGCGGAGTCCTAAAAGCAGCATCCGTC 17595943 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||| | |||| |||||| |||||||||| ||||||||||| Sbjct 17595942 GATCCCTGGTCGGCATTGTT-ATGGTTGAGACTAGGACGGTATCTTATCGTCTTCGA 17595887 >seq6 Length=60730942 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 25717238 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 25717297 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 25717298 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 25717354 Score = 77.0 bits (84), Expect = 2e-12 Identities = 91/118 (77%), Gaps = 4/118 (3%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGA-GTCA-AAATGATAACATCGCC 59 |||||||| || ||| ||| | |||||||||| |||| ||| ||| || ||||| Sbjct 10199623 AACCCAAAAACATTGTTTTGTAATAAGGTGCCG-GCGAAGTCCTAAAAGA-AACATTTGT 10199566 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || | |||| ||| ||||| |||| ||| || || | ||||||||||||||||| Sbjct 10199565 CGACCCGTGGTCGTCATCGTTTATGGTTGAGATTAGGATGATATCTGATCGTCTTCGA 10199508 Score = 75.2 bits (82), Expect = 6e-12 Identities = 70/89 (79%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 6 CAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCC 65 |||| ||||||||||||| ||||||| || ||||| || |||||| | ||||| Sbjct 5131324 CAAAAACTTTGATTTCTCATAAGGTGTCGGCGGAGTCCTAAAAGCAACATCCGCGGATCC 5131383 Query 66 CTAGTCGGCATAGTTTACGGTTAAGACTA 94 || |||||||| ||||| |||| |||||| Sbjct 5131384 CTGGTCGGCATCGTTTATGGTTGAGACTA 5131412 >seq11 Length=66223686 Score = 111 bits (122), Expect = 9e-23 Identities = 97/118 (82%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 ||||||||| | ||||||||||| ||||||||| |||| |||| || ||||| | Sbjct 19693311 GAACCCAAAAATTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATTCGC 19693253 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| | |||| ||| ||||| ||||||||||| |||| ||||||||||||||||| Sbjct 19693252 CGATCCATGGTCGACATCGTTTATGGTTAAGACTAGGACGATATCTGATCGTCTTCGA 19693195 >seq10 Length=82529941 Score = 95.1 bits (104), Expect = 7e-18 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 13 TTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCG 72 ||||||||||| |||| ||||| ||||| || |||||| |||||||| ||| Sbjct 65673423 TTTGATTTCTCATAAGTTGCCGGCGGAGTCCTAAAAGCAACATCCGTCGATCCCTGCTCG 65673364 Query 73 GCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||| |||| |||||| || ||||||||||||||||||| Sbjct 65673363 GCATCGTTTATGGTTGAGACTAGGAAGGTATCTGATCGTCTTCGA 65673319 >seq12 Length=83305730 Score = 75.2 bits (82), Expect = 6e-12 Identities = 86/116 (74%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||| ||| ||||||| |||||||| | ||||| || ||||| ||| Sbjct 65054193 AACCCAAAATTTTTTATTTCTCATAAGGTGCAGGCGGAGTCCTAAAAGCAACATTCGCCG 65054134 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | ||| ||| |||| |||| | |||| |||| |||||||||||||| || Sbjct 65054133 ATCCATGGTCATCATCATTTATGGTTGAAACTAGGACGATATCTGATCGTCTTTGA 65054078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278399968680