Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq10 93.3 4e-17 seq9 93.3 4e-17 seq6 93.3 4e-17 seq2 93.3 4e-17 seq8 87.8 2e-15 seq5 87.8 2e-15 seq3 82.4 8e-14 seq12 77.0 3e-12 >seq10 Length=82529941 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| || Sbjct 42981596 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAAGG 42981655 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 42981656 --GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 42981703 Score = 77.0 bits (84), Expect = 3e-12 Identities = 77/100 (77%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | | || ||||||| |||||||||| ||| || | ||| Sbjct 73821756 CAAACCGACACAGGTGAACAAGAAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 73821697 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| | |||| |||||| |||||||||||| || |||| Sbjct 73821696 GAACTCGCCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 73821657 >seq9 Length=84057508 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 57271026 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 57270969 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 57270968 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 57270919 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 74641945 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 74641888 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 74641887 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 74641838 >seq6 Length=60730942 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 39224638 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 39224695 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 39224696 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 39224745 Score = 78.8 bits (86), Expect = 1e-12 Identities = 61/73 (84%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 51 TATACTAAGGCGCTTGAGTGAATCACGGTTAAGGAACTAGGCAAACTGACCCTGTAACTT 110 ||||||| |||||||||| ||| || | |||||||| |||||| |||||| ||||||| Sbjct 45126542 TATACTAGGGCGCTTGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTT 45126601 Query 111 CGGGATAAAGGGT 123 ||||| || |||| Sbjct 45126602 CGGGAGAAGGGGT 45126614 >seq2 Length=59803892 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 27513737 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 27513680 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 27513679 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 27513630 Score = 82.4 bits (90), Expect = 8e-14 Identities = 89/116 (77%), Gaps = 3/116 (3%) Strand=Plus/Minus Query 81 AAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGG 140 |||||||| ||||| | ||| |||||||||||| || |||| ||| | || ||| || Sbjct 5453562 AAGGAACTCGGCAATATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GG 5453505 Query 141 AGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||||| || ||| || ||||||| ||| || |||||||||| || ||| || Sbjct 5453504 GGGTCGCAGTGACCAGGCCCGGGCAACTATTT-ACCAAAACACAGGTCTCTGCAAA 5453450 Score = 73.4 bits (80), Expect = 4e-11 Identities = 57/68 (84%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 56 TAAGGCGCTTGAGTGAATCACGGTTAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGA 115 || |||||||||| ||| || | | |||||||| |||||| |||||| |||||||||||| Sbjct 29331710 TAGGGCGCTTGAGAGAACCATGTTGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGA 29331651 Query 116 TAAAGGGT 123 || |||| Sbjct 29331650 GAAGGGGT 29331643 >seq8 Length=70546659 Score = 87.8 bits (96), Expect = 2e-15 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| | |||| | ||| ||||||| |||| || |||| ||| | || ||| || Sbjct 46043621 TAAGGAACTCGTCAAAATAGCCCCGTAACTTTGGGAGAAGGGGTTCCTCCTCACAAAGGG 46043680 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | | ||||| || ||| || ||| |||||||| |||||||||||| || ||| || Sbjct 46043681 G--GTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTTTGCAAA 46043735 >seq5 Length=77991103 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 19435829 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 19435772 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || || || || ||| || ||| |||||||| |||||||||||| || Sbjct 19435771 GGGGTCGTAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 19435722 >seq3 Length=75414019 Score = 82.4 bits (90), Expect = 8e-14 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 |||| |||||| || | || || ||||||| | |||||||| |||||| | ||| Sbjct 68021944 CAAATCGACACAGGTGAGCAAGTAGAGTATACTAGGACGCTTGAGAGAATCATGTCAAAG 68022003 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 68022004 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 68022043 >seq12 Length=83305730 Score = 77.0 bits (84), Expect = 3e-12 Identities = 77/100 (77%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | | || ||||||| |||||||||| ||| || | ||| Sbjct 55912716 CAAACCGACACAGGTGAACAAGAAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 55912657 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| | |||| |||||| |||||||||||| || |||| Sbjct 55912656 GAACTCGCCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 55912617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531199938248