Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11]
12 sequences; 926,426,464 total letters
Query= AAMG01000567.1
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
seq10 93.3 4e-17
seq9 93.3 4e-17
seq6 93.3 4e-17
seq2 93.3 4e-17
seq8 87.8 2e-15
seq5 87.8 2e-15
seq3 82.4 8e-14
seq12 77.0 3e-12
>seq10
Length=82529941
Score = 93.3 bits (102), Expect = 4e-17
Identities = 87/110 (79%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| ||
Sbjct 42981596 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAAGG 42981655
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
|| ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 42981656 --GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 42981703
Score = 77.0 bits (84), Expect = 3e-12
Identities = 77/100 (77%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83
||||| |||||| || | | || ||||||| |||||||||| ||| || | |||
Sbjct 73821756 CAAACCGACACAGGTGAACAAGAAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 73821697
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123
||||| | |||| |||||| |||||||||||| || ||||
Sbjct 73821696 GAACTCGCCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 73821657
>seq9
Length=84057508
Score = 93.3 bits (102), Expect = 4e-17
Identities = 87/110 (79%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| |
Sbjct 57271026 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 57270969
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 57270968 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 57270919
Score = 93.3 bits (102), Expect = 4e-17
Identities = 87/110 (79%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| |
Sbjct 74641945 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 74641888
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 74641887 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 74641838
>seq6
Length=60730942
Score = 93.3 bits (102), Expect = 4e-17
Identities = 87/110 (79%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| |
Sbjct 39224638 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 39224695
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 39224696 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 39224745
Score = 78.8 bits (86), Expect = 1e-12
Identities = 61/73 (84%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 51 TATACTAAGGCGCTTGAGTGAATCACGGTTAAGGAACTAGGCAAACTGACCCTGTAACTT 110
||||||| |||||||||| ||| || | |||||||| |||||| |||||| |||||||
Sbjct 45126542 TATACTAGGGCGCTTGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTT 45126601
Query 111 CGGGATAAAGGGT 123
||||| || ||||
Sbjct 45126602 CGGGAGAAGGGGT 45126614
>seq2
Length=59803892
Score = 93.3 bits (102), Expect = 4e-17
Identities = 87/110 (79%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| |
Sbjct 27513737 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 27513680
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 27513679 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 27513630
Score = 82.4 bits (90), Expect = 8e-14
Identities = 89/116 (77%), Gaps = 3/116 (3%)
Strand=Plus/Minus
Query 81 AAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGG 140
|||||||| ||||| | ||| |||||||||||| || |||| ||| | || ||| ||
Sbjct 5453562 AAGGAACTCGGCAATATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GG 5453505
Query 141 AGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196
|| ||||| || ||| || ||||||| ||| || |||||||||| || ||| ||
Sbjct 5453504 GGGTCGCAGTGACCAGGCCCGGGCAACTATTT-ACCAAAACACAGGTCTCTGCAAA 5453450
Score = 73.4 bits (80), Expect = 4e-11
Identities = 57/68 (84%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 56 TAAGGCGCTTGAGTGAATCACGGTTAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGA 115
|| |||||||||| ||| || | | |||||||| |||||| |||||| ||||||||||||
Sbjct 29331710 TAGGGCGCTTGAGAGAACCATGTTGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGA 29331651
Query 116 TAAAGGGT 123
|| ||||
Sbjct 29331650 GAAGGGGT 29331643
>seq8
Length=70546659
Score = 87.8 bits (96), Expect = 2e-15
Identities = 90/117 (77%), Gaps = 2/117 (2%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| | |||| | ||| ||||||| |||| || |||| ||| | || ||| ||
Sbjct 46043621 TAAGGAACTCGTCAAAATAGCCCCGTAACTTTGGGAGAAGGGGTTCCTCCTCACAAAGGG 46043680
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196
| | ||||| || ||| || ||| |||||||| |||||||||||| || ||| ||
Sbjct 46043681 G--GTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTTTGCAAA 46043735
>seq5
Length=77991103
Score = 87.8 bits (96), Expect = 2e-15
Identities = 86/110 (78%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| |
Sbjct 19435829 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 19435772
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || || || || ||| || ||| |||||||| |||||||||||| ||
Sbjct 19435771 GGGGTCGTAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 19435722
>seq3
Length=75414019
Score = 82.4 bits (90), Expect = 8e-14
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83
|||| |||||| || | || || ||||||| | |||||||| |||||| | |||
Sbjct 68021944 CAAATCGACACAGGTGAGCAAGTAGAGTATACTAGGACGCTTGAGAGAATCATGTCAAAG 68022003
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123
||||| |||||| |||||| |||||||||||| || ||||
Sbjct 68022004 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 68022043
>seq12
Length=83305730
Score = 77.0 bits (84), Expect = 3e-12
Identities = 77/100 (77%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83
||||| |||||| || | | || ||||||| |||||||||| ||| || | |||
Sbjct 55912716 CAAACCGACACAGGTGAACAAGAAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 55912657
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123
||||| | |||| |||||| |||||||||||| || ||||
Sbjct 55912656 GAACTCGCCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 55912617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531199938248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |