Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11]
12 sequences; 926,426,464 total letters
Query= AAMG01000599.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq9 87.8 2e-15
seq6 87.8 2e-15
seq2 87.8 2e-15
seq12 86.0 6e-15
seq8 78.8 9e-13
seq5 78.8 9e-13
seq4 75.2 1e-11
>seq9
Length=84057508
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 57270966 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 57270907
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 57270906 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 57270861
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 74641885 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 74641826
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 74641825 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 74641780
>seq6
Length=60730942
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 39224698 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 39224757
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 39224758 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 39224803
>seq2
Length=59803892
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 27513677 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 27513618
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 27513617 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 27513572
Score = 82.4 bits (90), Expect = 7e-14
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
||||||| | ||||||||||||||||||||| | ||||||| || | || ||
Sbjct 29331610 ATACCAGAGAGTAGCGACTGTTTATTAAAAACACGGGACTCTGCTAAGTGGTAACATGAT 29331551
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || |||| |||||||||||| |||||||
Sbjct 29331550 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 29331516
>seq12
Length=83305730
Score = 86.0 bits (94), Expect = 6e-15
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | |||||||||||||||||||||| ||||||| || | || ||
Sbjct 8204136 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAAGACTCTGCTAAGTGGTAACACGAT 8204195
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || |||| |||||||||||| |||||||
Sbjct 8204196 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 8204230
>seq8
Length=70546659
Score = 78.8 bits (86), Expect = 9e-13
Identities = 81/106 (76%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| || |||||| |
Sbjct 46043681 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTTTGCAAAGTTGT 46043740
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||| ||||||| ||
Sbjct 46043741 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCTGGAAGGTCAA 46043786
>seq5
Length=77991103
Score = 78.8 bits (86), Expect = 9e-13
Identities = 81/106 (76%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| |||| ||
Sbjct 19435769 GGTCGTAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCACAAAGTCGT 19435710
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| ||| |||||||| |||||||||||| ||
Sbjct 19435709 AAGACCATGTATGGGGGCTGATGCCTGCCCAGTGCCGGAAGGTCAA 19435664
>seq4
Length=77197300
Score = 75.2 bits (82), Expect = 1e-11
Identities = 75/96 (78%), Gaps = 1/96 (1%)
Strand=Plus/Plus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | |||||| ||||||||||||| || ||||||| || | || ||
Sbjct 49145072 ATACCAGGG-GTAGCGACTTTTTATTAAAAACATAGGACTCTGCTAAGTGGTAACACGAT 49145130
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTT 150
|||||| || |||| |||||||| ||| ||||||||
Sbjct 49145131 GTATAGAGTCTGACACCTGCCCGTTGCTGGAAGGTT 49145166
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476799944572
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |