Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq9 87.8 2e-15 seq6 87.8 2e-15 seq2 87.8 2e-15 seq12 86.0 6e-15 seq8 78.8 9e-13 seq5 78.8 9e-13 seq4 75.2 1e-11 >seq9 Length=84057508 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 57270966 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 57270907 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 57270906 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 57270861 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 74641885 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 74641826 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 74641825 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 74641780 >seq6 Length=60730942 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 39224698 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 39224757 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 39224758 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 39224803 >seq2 Length=59803892 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 27513677 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 27513618 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 27513617 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 27513572 Score = 82.4 bits (90), Expect = 7e-14 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 ||||||| | ||||||||||||||||||||| | ||||||| || | || || Sbjct 29331610 ATACCAGAGAGTAGCGACTGTTTATTAAAAACACGGGACTCTGCTAAGTGGTAACATGAT 29331551 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||||||||| ||||||| Sbjct 29331550 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 29331516 >seq12 Length=83305730 Score = 86.0 bits (94), Expect = 6e-15 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | |||||||||||||||||||||| ||||||| || | || || Sbjct 8204136 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAAGACTCTGCTAAGTGGTAACACGAT 8204195 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||||||||| ||||||| Sbjct 8204196 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 8204230 >seq8 Length=70546659 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| || |||||| | Sbjct 46043681 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTTTGCAAAGTTGT 46043740 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||| ||||||| || Sbjct 46043741 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCTGGAAGGTCAA 46043786 >seq5 Length=77991103 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| |||| || Sbjct 19435769 GGTCGTAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCACAAAGTCGT 19435710 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| ||| |||||||| |||||||||||| || Sbjct 19435709 AAGACCATGTATGGGGGCTGATGCCTGCCCAGTGCCGGAAGGTCAA 19435664 >seq4 Length=77197300 Score = 75.2 bits (82), Expect = 1e-11 Identities = 75/96 (78%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | |||||| ||||||||||||| || ||||||| || | || || Sbjct 49145072 ATACCAGGG-GTAGCGACTTTTTATTAAAAACATAGGACTCTGCTAAGTGGTAACACGAT 49145130 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTT 150 |||||| || |||| |||||||| ||| |||||||| Sbjct 49145131 GTATAGAGTCTGACACCTGCCCGTTGCTGGAAGGTT 49145166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476799944572