Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= AAMG01001210.1 Length=647 Score E Sequences producing significant alignments: (Bits) Value seq9 379 8e-103 >seq9 Length=84057508 Score = 379 bits (420), Expect = 8e-103 Identities = 313/380 (82%), Gaps = 15/380 (4%) Strand=Plus/Plus Query 276 GCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTATAAGG 335 ||||||||||||||||| ||||||||||| ||||||||| |||||||||| || |||| Sbjct 78986520 GCTCCAAAGAGGAAAAGACCAAGGCAAGTCTTGGAAAATCCTGGAGGATTTAGTGTAAGA 78986579 Query 336 AGCAGCCCCATTTCG---------GCTAAAGTGGAGATGGATCAAACAACAATGAAGATG 386 |||| ||||||||| |||||||| ||||||||||| |||||||||||| | Sbjct 78986580 AGCACCCCCATTTCATCTTCTACAGCTAAAGTTGAGATGGATCAGACAACAATGAAGTTA 78986639 Query 387 GAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTACAGCGGAAAATGGAGTTTCC 446 ||||||| ||| |||||||||||||||| |||||| ||| | || |||||||| ||||| Sbjct 78986640 GAGGTTTTTTCACCTAATTTGGAGAAGAACCCACAGTCTGCTGCTGAAAATGGTGTTTCT 78986699 Query 447 TTATATGATTTGGGTGCTTCTGTACAAAGTTTGCCGGTGGTAACAGATCCGGTACCGGAG 506 ||||||||||| ||| ||||| ||||||||||||| || | |||||||||||||||| Sbjct 78986700 TTATATGATTTAAGTGGTTCTGCTCAAAGTTTGCCGGCGGCAGTAGATCCGGTACCGGAG 78986759 Query 507 CCGATGAAGGTTGAATCTGAGGTCAAGAGGAGGCCTGATGAATCTGAATTTACTATGGAG 566 ||||||||| | |||||||| ||||||||||||||||||||| ||||||| | ||||| Sbjct 78986760 CCGATGAAGATGGAATCTGACGTCAAGAGGAGGCCTGATGAAACTGAATT---TGTGGAG 78986816 Query 567 AGTAAAGTGGAAGTGAATTCACCTAAGAAGGATACTTCTACTGTTGTTGCAGCGGAGAGT 626 ||||| | |||||||||||| || |||| ||| ||| |||| ||| | || || | | Sbjct 78986817 AGTAAGGAGGAAGTGAATTCCCCAAAGAGGGAATCTTTTACT-TTG--GGAGTAGATAAT 78986873 Query 627 AGTATTCATGAGGTTGCTGC 646 ||||||| ||||| || ||| Sbjct 78986874 AGTATTCGTGAGGATGTTGC 78986893 Score = 246 bits (272), Expect = 1e-62 Identities = 204/245 (83%), Gaps = 17/245 (7%) Strand=Plus/Plus Query 39 AAGCCACACGGACAAAAAAGGCCACCAGCAAAGTCACCACCTAAAGCTTCTTCATCTAAT 98 ||||| | |||||||| |||| || ||||||||||| || ||||||||||||||||| Sbjct 78986187 AAGCCTAATGGACAAAAGCGGCCGCCGGCAAAGTCACCTCCAAAAGCTTCTTCATCTAAC 78986246 Query 99 CCTGAAGAGCTGGAGATTGAGATTGCTGAAGTTCTTTTTGGTTTG-------AGTCATCA 151 ||||||||||| ||||||||||||||||||||||| | ||| ||| ||||| || Sbjct 78986247 CCTGAAGAGCTTGAGATTGAGATTGCTGAAGTTCTGTATGGATTGATGACTCAGTCA-CA 78986305 Query 152 TGGACCTTCCAAAAAAGATACAAGTGTGACAAATGATAATACAAGAGAAGTTAATAATAA 211 |||||||| |||||||| |||||| || ||| | ||||||||||||| |||||| Sbjct 78986306 AGGACCTTCAAAAAAAGA---AAGTGT-ACCAAT--TGATACAAGAGAAGT---TAATAA 78986356 Query 212 CAGATCCAGAGTTTCATCTCCTGTTTCTAATTCTAACTCATCAGCTACTCCTTTATCTGC 271 ||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||| Sbjct 78986357 CAGATCCAGAGTTTCATCTCCAGCTTCTAATTCAAACTCATCAGCAACTCCTTTATCTGT 78986416 Query 272 TGCTG 276 || || Sbjct 78986417 TGTTG 78986421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1964799756856