Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11]
12 sequences; 926,426,464 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq6 127 2e-27
seq5 123 2e-26
seq11 122 7e-26
seq10 114 1e-23
seq1 111 1e-22
seq9 95.1 1e-17
seq12 91.5 1e-16
>seq6
Length=60730942
Score = 127 bits (140), Expect = 2e-27
Identities = 124/160 (78%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| |||| ||||||| |||||||||
Sbjct 39220523 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 39220464
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 39220463 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 39220404
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 39220403 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 39220364
Score = 122 bits (134), Expect = 7e-26
Identities = 125/161 (78%), Gaps = 2/161 (1%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60
|||||||||| || ||||||| ||| | ||| ||| |||||||| ||| ||||||||
Sbjct 35300973 CGAGTTGCAGCCTGCAATCCGAACTGAGGATGGGTTTT-TGGGATTATCTCACCCTCGCG 35301031
Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
|| | ||| |||| ||| |||||||| |||| || |||| |||||||| ||
Sbjct 35301032 GGATCGCGACCCTTTGTCGTGGCCATTGTAGCACGTTTGTCGCCCAGGGCATAAGGGGCA 35301091
Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
||| |||||||| |||||| ||||||||||||| || ||||
Sbjct 35301092 TGATGACTTGACATCATCCTCACCTTCCTCCGGCTTATCAC 35301132
>seq5
Length=77991103
Score = 123 bits (136), Expect = 2e-26
Identities = 124/160 (78%), Gaps = 1/160 (1%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | |
Sbjct 17817193 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 17817135
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| |||| | |||||||| ||||||| |||| ||||||||||||||
Sbjct 17817134 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 17817075
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| |||||||||||||||||||||||||||| || | ||||
Sbjct 17817074 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 17817035
Score = 80.6 bits (88), Expect = 2e-13
Identities = 65/79 (82%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142
|||||||| | ||||| |||| |||||||| ||||| ||||||||||||||| ||
Sbjct 32510492 CCATTGTAGCATGTGTGTCGCCCAGGGCATAAGGGGCATGATGACTTGACGTCATCCTCA 32510433
Query 143 CCTTCCTCCGGTTTGTCAC 161
||||||||||| || ||||
Sbjct 32510432 CCTTCCTCCGGCTTATCAC 32510414
>seq11
Length=66223686
Score = 122 bits (134), Expect = 7e-26
Identities = 123/160 (77%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||| ||||| || ||||||| ||| | ||| |||| ||||||| ||||||| |
Sbjct 46375318 CGAGCTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCAG 46375377
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| | |||||||| ||||||| |||| |||||||| |||
Sbjct 46375378 GATCGCGACCCTTTGTTTCGGCCATTGTAGTACGTGTGTCGCCCAGTGCATAAGGGGCAT 46375437
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 46375438 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 46375477
Score = 113 bits (124), Expect = 4e-23
Identities = 121/160 (76%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||| ||||| || ||||||| |||| | ||| |||| ||||||| ||||| |||
Sbjct 46405419 CGAGATGCAGCCTGCAATCCGAACTAAGGACGGTTTTTTGGGGTTAGCTCACCCTCACGG 46405360
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| ||| |||| ||| | |||||||| ||||||| |||| | |||||||| |||
Sbjct 46405359 CATCGCGACCCTTTGTCTCGGCCATTGTAACACGTGTGTCGCCCAAGGCATAAGGGGCAT 46405300
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||| |||||| ||||||||||| | || ||||
Sbjct 46405299 GAATACTTGACATCATCCTCACCTTCCTCCTGCTTATCAC 46405260
Score = 91.5 bits (100), Expect = 1e-16
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| |||| ||| ||| |||| ||||
Sbjct 24561379 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTATCTCACCCTTGCGG 24561438
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | || |||| ||| ||||||| ||||| | ||| | ||||||| |||
Sbjct 24561439 GATCACGACCCTTTGTCCCGGACATTGTAGCACGTGCGTTTCCCAAGGCATAAGGTGCAT 24561498
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTC 159
|| ||||||||||||||| ||||||||||| | || ||
Sbjct 24561499 GATGACTTGACGTCATCCTCACCTTCCTCCAGCTTATC 24561536
Score = 80.6 bits (88), Expect = 2e-13
Identities = 86/111 (77%), Gaps = 2/111 (2%)
Strand=Plus/Minus
Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTA-TGTACCATTGTATGAC 94
||| |||| ||||||| |||||||||| | ||| |||| | | ||| |||||||| ||
Sbjct 61124106 TTTTTGGGGTTAGCTCACCCTCGCGGGATCGCGACCCTTTTTCCTGT-CCATTGTAGCAC 61124048
Query 95 GTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCT 145
||||| |||| ||| ||| ||||| ||||||||||||||| || ||
Sbjct 61124047 GTGTGTCGCCCAGGGCATGAGGAGCATGATGACTTGACGTCATCCTCAGCT 61123997
Score = 73.4 bits (80), Expect = 3e-11
Identities = 107/150 (71%), Gaps = 1/150 (1%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||| ||| ||| || | ||| | | ||||| | |||||||| |||| ||
Sbjct 50738248 CGAGTTGTAGAGAACATTCAGAACTGAGGCAATCTTTCCAG-ATTAGCTCTCCCTTAAGG 50738306
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| |||| | |||||| | || ||| |||| ||||||||||||||
Sbjct 50738307 CCTTGCTTCCCATTGTAATTGCCATTGCAATACATGTATGGCCCAGCCCATAAGGGCCAT 50738366
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCC 151
| |||||| || | ||||||||||| ||||
Sbjct 50738367 GCGGACTTAACATTATCCCCACCTTTCTCC 50738396
>seq10
Length=82529941
Score = 114 bits (126), Expect = 1e-23
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| |||| ||||||| |||||||||
Sbjct 45126085 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 45126144
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| ||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 45126145 GATCGCGACCCATTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 45126204
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTC 159
|| |||||||||| |||| ||||||||||||| || ||
Sbjct 45126205 GATGACTTGACGTTATCCTCACCTTCCTCCGGCTTATC 45126242
Score = 109 bits (120), Expect = 5e-22
Identities = 120/160 (75%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || |||||| ||| | ||| |||| |||| || |||||||||
Sbjct 42977494 CGAGTTGCAGCCTGCAATCCAAACTGAGGACGGGTTTTTGGGGTTAGGTCACCCTCGCGG 42977435
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| ||||| || |||
Sbjct 42977434 GATTGCGACCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGCCCAGGGCATAACGGGCAT 42977375
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||| ||| || ||||
Sbjct 42977374 GATGACTTGACGTCATCCTCACCTTCCTTCGGCTTATCAC 42977335
>seq1
Length=109333515
Score = 111 bits (122), Expect = 1e-22
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| |||| |||| || |||||||||
Sbjct 82010303 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGGTCACCCTCGCGG 82010362
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 82010363 GATCGCGACCCTTTGTCCTGGCCATTGTAGCACGTGTGTCGCCCAGAGCATAAGGGGCAT 82010422
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTC 150
|| ||||||||||||||| ||||||||||
Sbjct 82010423 GATGACTTGACGTCATCCTCACCTTCCTC 82010451
Score = 78.8 bits (86), Expect = 8e-13
Identities = 115/159 (72%), Gaps = 3/159 (2%)
Strand=Plus/Minus
Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62
|||||||| |||||||||| ||| || ||| | | || | ||||| |||| ||||
Sbjct 81708291 GAGTTGCATCCTACAATCCGAACTGAGA-ACATATGTTTGGTTGAGCTCATCCTC-CGGG 81708234
Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122
| ||| |||| ||| | ||| ||| | |||| |||| | | |||||| ||||
Sbjct 81708233 ATCGCGACCCTTTGTCC-TGGCATAGTAGCATGTGTCTCGCCCAAGGCGTAAGGGGCATG 81708175
Query 123 AGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| ||| ||| |||||| ||||||||||||| || ||||
Sbjct 81708174 ATGACGGGACCTCATCCTCACCTTCCTCCGGCTTATCAC 81708136
>seq9
Length=84057508
Score = 95.1 bits (104), Expect = 1e-17
Identities = 73/87 (84%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 75 TGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGT 134
|||| | ||| |||| || |||| |||| |||||||||||||| |||||||||||||
Sbjct 55158653 TGTAATTGCCAATGTAGCACATGTGTGGCCCAACCCATAAGGGCCACGAGGACTTGACGT 55158712
Query 135 CATCCCCACCTTCCTCCGGTTTGTCAC 161
||||||||||||||||| || | ||||
Sbjct 55158713 CATCCCCACCTTCCTCCAGTATATCAC 55158739
Score = 84.2 bits (92), Expect = 2e-14
Identities = 118/161 (73%), Gaps = 5/161 (3%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGAT-ACAC-TTTCTGGGATTAGCTCCCCCTCGC 59
||||||||| || |||||| | | ||| || ||| |||| ||||||| |||| ||
Sbjct 65245351 CGAGTTGCAACCTGCAATCCAAATT--GATGACGGGTTTTTGGGGTTAGCTCACCCT-GC 65245407
Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119
||| | | |||| ||| | | ||||||| ||||||| ||| | |||||||| |
Sbjct 65245408 GGGATCTCAACCCTTTGTCTCAAAAATTGTATCACGTGTGCCGCCGAAGGCATAAGGGGC 65245467
Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160
|| ||||| | ||||||| ||||||||||||| || |||
Sbjct 65245468 ATAGTGACTTCATGTCATCCTCACCTTCCTCCGGCTTATCA 65245508
Score = 82.4 bits (90), Expect = 6e-14
Identities = 116/161 (72%), Gaps = 3/161 (2%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTG-GGATTAGCTCCCCCTCGCG 60
||||||||||| ||||||| ||| || || | | | ||||| ||||| ||| |
Sbjct 59461320 CGAGTTGCAGAGAACAATCCTAACT--GAAGCAATATTTCCGGATTTGCTCCGCCTTACA 59461263
Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
| || ||| |||| | ||| |||| ||||||| |||| ||||||||| |||
Sbjct 59461262 ACCTTGCTTCCCATTGTAATTGCCAATGTAACACGTGTGTGGCCCAGCCCATAAGGTCCA 59461203
Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||||||| |||| | || | ||||
Sbjct 59461202 TGCACACTTGACGTCATCCCCACCGTCCTTCAGTATATCAC 59461162
Score = 73.4 bits (80), Expect = 3e-11
Identities = 84/113 (74%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 42 GGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAA 101
||||| |||| ||| | | | || ||| |||| | |||||||| |||||||
Sbjct 56294508 GGATTCGCTCTGCCTTACAGCCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTG 56294449
Query 102 GCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGT 154
|||| ||||||| ||| ||| ||||| | ||||||||||||||||||| ||
Sbjct 56294448 GCCCAGCCCATAACGGCTATGCGGACTATATGTCATCCCCACCTTCCTCCAGT 56294396
>seq12
Length=83305730
Score = 91.5 bits (100), Expect = 1e-16
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 42 GGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAA 101
||||| ||||| ||| | | | || ||| |||| | |||||||| |||||||
Sbjct 59821021 GGATTCGCTCCGCCTTACAGCGTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTG 59820962
Query 102 GCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCC 151
|||| ||||||||||| |||| ||||||||||||||||||| |||| |||
Sbjct 59820961 GCCCAACCCATAAGGGTCATGCGGACTTGACGTCATCCCCATCTTCTTCC 59820912
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415999951640
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