Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq6 127 2e-27 seq5 123 2e-26 seq11 122 7e-26 seq10 114 1e-23 seq1 111 1e-22 seq9 95.1 1e-17 seq12 91.5 1e-16 >seq6 Length=60730942 Score = 127 bits (140), Expect = 2e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||||||| ||||||||| Sbjct 39220523 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 39220464 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 39220463 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 39220404 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 39220403 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 39220364 Score = 122 bits (134), Expect = 7e-26 Identities = 125/161 (78%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||| || ||||||| ||| | ||| ||| |||||||| ||| |||||||| Sbjct 35300973 CGAGTTGCAGCCTGCAATCCGAACTGAGGATGGGTTTT-TGGGATTATCTCACCCTCGCG 35301031 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || | ||| |||| ||| |||||||| |||| || |||| |||||||| || Sbjct 35301032 GGATCGCGACCCTTTGTCGTGGCCATTGTAGCACGTTTGTCGCCCAGGGCATAAGGGGCA 35301091 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| |||||||| |||||| ||||||||||||| || |||| Sbjct 35301092 TGATGACTTGACATCATCCTCACCTTCCTCCGGCTTATCAC 35301132 >seq5 Length=77991103 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 17817193 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 17817135 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 17817134 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 17817075 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 17817074 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 17817035 Score = 80.6 bits (88), Expect = 2e-13 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| | ||||| |||| |||||||| ||||| ||||||||||||||| || Sbjct 32510492 CCATTGTAGCATGTGTGTCGCCCAGGGCATAAGGGGCATGATGACTTGACGTCATCCTCA 32510433 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||||| || |||| Sbjct 32510432 CCTTCCTCCGGCTTATCAC 32510414 >seq11 Length=66223686 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||| ||||| || ||||||| ||| | ||| |||| ||||||| ||||||| | Sbjct 46375318 CGAGCTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCAG 46375377 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| | |||||||| ||||||| |||| |||||||| ||| Sbjct 46375378 GATCGCGACCCTTTGTTTCGGCCATTGTAGTACGTGTGTCGCCCAGTGCATAAGGGGCAT 46375437 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 46375438 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 46375477 Score = 113 bits (124), Expect = 4e-23 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||| ||||| || ||||||| |||| | ||| |||| ||||||| ||||| ||| Sbjct 46405419 CGAGATGCAGCCTGCAATCCGAACTAAGGACGGTTTTTTGGGGTTAGCTCACCCTCACGG 46405360 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | ||| |||| ||| | |||||||| ||||||| |||| | |||||||| ||| Sbjct 46405359 CATCGCGACCCTTTGTCTCGGCCATTGTAACACGTGTGTCGCCCAAGGCATAAGGGGCAT 46405300 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||| |||||| ||||||||||| | || |||| Sbjct 46405299 GAATACTTGACATCATCCTCACCTTCCTCCTGCTTATCAC 46405260 Score = 91.5 bits (100), Expect = 1e-16 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||| ||| |||| |||| Sbjct 24561379 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTATCTCACCCTTGCGG 24561438 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || |||| ||| ||||||| ||||| | ||| | ||||||| ||| Sbjct 24561439 GATCACGACCCTTTGTCCCGGACATTGTAGCACGTGCGTTTCCCAAGGCATAAGGTGCAT 24561498 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTC 159 || ||||||||||||||| ||||||||||| | || || Sbjct 24561499 GATGACTTGACGTCATCCTCACCTTCCTCCAGCTTATC 24561536 Score = 80.6 bits (88), Expect = 2e-13 Identities = 86/111 (77%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTA-TGTACCATTGTATGAC 94 ||| |||| ||||||| |||||||||| | ||| |||| | | ||| |||||||| || Sbjct 61124106 TTTTTGGGGTTAGCTCACCCTCGCGGGATCGCGACCCTTTTTCCTGT-CCATTGTAGCAC 61124048 Query 95 GTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCT 145 ||||| |||| ||| ||| ||||| ||||||||||||||| || || Sbjct 61124047 GTGTGTCGCCCAGGGCATGAGGAGCATGATGACTTGACGTCATCCTCAGCT 61123997 Score = 73.4 bits (80), Expect = 3e-11 Identities = 107/150 (71%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||| ||| ||| || | ||| | | ||||| | |||||||| |||| || Sbjct 50738248 CGAGTTGTAGAGAACATTCAGAACTGAGGCAATCTTTCCAG-ATTAGCTCTCCCTTAAGG 50738306 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||| | || ||| |||| |||||||||||||| Sbjct 50738307 CCTTGCTTCCCATTGTAATTGCCATTGCAATACATGTATGGCCCAGCCCATAAGGGCCAT 50738366 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCC 151 | |||||| || | ||||||||||| |||| Sbjct 50738367 GCGGACTTAACATTATCCCCACCTTTCTCC 50738396 >seq10 Length=82529941 Score = 114 bits (126), Expect = 1e-23 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||||||| ||||||||| Sbjct 45126085 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 45126144 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| ||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 45126145 GATCGCGACCCATTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 45126204 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTC 159 || |||||||||| |||| ||||||||||||| || || Sbjct 45126205 GATGACTTGACGTTATCCTCACCTTCCTCCGGCTTATC 45126242 Score = 109 bits (120), Expect = 5e-22 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || |||||| ||| | ||| |||| |||| || ||||||||| Sbjct 42977494 CGAGTTGCAGCCTGCAATCCAAACTGAGGACGGGTTTTTGGGGTTAGGTCACCCTCGCGG 42977435 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| ||||| || ||| Sbjct 42977434 GATTGCGACCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGCCCAGGGCATAACGGGCAT 42977375 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||| ||| || |||| Sbjct 42977374 GATGACTTGACGTCATCCTCACCTTCCTTCGGCTTATCAC 42977335 >seq1 Length=109333515 Score = 111 bits (122), Expect = 1e-22 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| |||| || ||||||||| Sbjct 82010303 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGGTCACCCTCGCGG 82010362 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 82010363 GATCGCGACCCTTTGTCCTGGCCATTGTAGCACGTGTGTCGCCCAGAGCATAAGGGGCAT 82010422 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTC 150 || ||||||||||||||| |||||||||| Sbjct 82010423 GATGACTTGACGTCATCCTCACCTTCCTC 82010451 Score = 78.8 bits (86), Expect = 8e-13 Identities = 115/159 (72%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 |||||||| |||||||||| ||| || ||| | | || | ||||| |||| |||| Sbjct 81708291 GAGTTGCATCCTACAATCCGAACTGAGA-ACATATGTTTGGTTGAGCTCATCCTC-CGGG 81708234 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | ||| |||| ||| | ||| ||| | |||| |||| | | |||||| |||| Sbjct 81708233 ATCGCGACCCTTTGTCC-TGGCATAGTAGCATGTGTCTCGCCCAAGGCGTAAGGGGCATG 81708175 Query 123 AGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||| ||| |||||| ||||||||||||| || |||| Sbjct 81708174 ATGACGGGACCTCATCCTCACCTTCCTCCGGCTTATCAC 81708136 >seq9 Length=84057508 Score = 95.1 bits (104), Expect = 1e-17 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 75 TGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGT 134 |||| | ||| |||| || |||| |||| |||||||||||||| ||||||||||||| Sbjct 55158653 TGTAATTGCCAATGTAGCACATGTGTGGCCCAACCCATAAGGGCCACGAGGACTTGACGT 55158712 Query 135 CATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||||||||| || | |||| Sbjct 55158713 CATCCCCACCTTCCTCCAGTATATCAC 55158739 Score = 84.2 bits (92), Expect = 2e-14 Identities = 118/161 (73%), Gaps = 5/161 (3%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGAT-ACAC-TTTCTGGGATTAGCTCCCCCTCGC 59 ||||||||| || |||||| | | ||| || ||| |||| ||||||| |||| || Sbjct 65245351 CGAGTTGCAACCTGCAATCCAAATT--GATGACGGGTTTTTGGGGTTAGCTCACCCT-GC 65245407 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 ||| | | |||| ||| | | ||||||| ||||||| ||| | |||||||| | Sbjct 65245408 GGGATCTCAACCCTTTGTCTCAAAAATTGTATCACGTGTGCCGCCGAAGGCATAAGGGGC 65245467 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160 || ||||| | ||||||| ||||||||||||| || ||| Sbjct 65245468 ATAGTGACTTCATGTCATCCTCACCTTCCTCCGGCTTATCA 65245508 Score = 82.4 bits (90), Expect = 6e-14 Identities = 116/161 (72%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTG-GGATTAGCTCCCCCTCGCG 60 ||||||||||| ||||||| ||| || || | | | ||||| ||||| ||| | Sbjct 59461320 CGAGTTGCAGAGAACAATCCTAACT--GAAGCAATATTTCCGGATTTGCTCCGCCTTACA 59461263 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || ||| |||| | ||| |||| ||||||| |||| ||||||||| ||| Sbjct 59461262 ACCTTGCTTCCCATTGTAATTGCCAATGTAACACGTGTGTGGCCCAGCCCATAAGGTCCA 59461203 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||||||| |||| | || | |||| Sbjct 59461202 TGCACACTTGACGTCATCCCCACCGTCCTTCAGTATATCAC 59461162 Score = 73.4 bits (80), Expect = 3e-11 Identities = 84/113 (74%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 42 GGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAA 101 ||||| |||| ||| | | | || ||| |||| | |||||||| ||||||| Sbjct 56294508 GGATTCGCTCTGCCTTACAGCCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTG 56294449 Query 102 GCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGT 154 |||| ||||||| ||| ||| ||||| | ||||||||||||||||||| || Sbjct 56294448 GCCCAGCCCATAACGGCTATGCGGACTATATGTCATCCCCACCTTCCTCCAGT 56294396 >seq12 Length=83305730 Score = 91.5 bits (100), Expect = 1e-16 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 42 GGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAA 101 ||||| ||||| ||| | | | || ||| |||| | |||||||| ||||||| Sbjct 59821021 GGATTCGCTCCGCCTTACAGCGTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTG 59820962 Query 102 GCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCC 151 |||| ||||||||||| |||| ||||||||||||||||||| |||| ||| Sbjct 59820961 GCCCAACCCATAAGGGTCATGCGGACTTGACGTCATCCCCATCTTCTTCC 59820912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415999951640