Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq11 91.5 1e-16 seq9 87.8 1e-15 seq6 87.8 1e-15 seq2 86.0 4e-15 seq7 84.2 2e-14 seq8 73.4 3e-11 seq4 71.6 1e-10 >seq11 Length=66223686 Score = 91.5 bits (100), Expect = 1e-16 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || ||||||||| ||||||||||||||||| | || | || |||||||||| | || Sbjct 46370457 TAACTTTTATCCATTGAGCGATGGCCCTTCTACTCGTCACCGTCGGATCACTAAGGCCGA 46370516 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | ||| | ||| ||| |||||| | ||| |||| ||||||| Sbjct 46370517 CTTTCGTGCCTGCTCGACGTGTGGGTCTTGCAGTCAAGCTCTCTTCTGCCTTTGCACT 46370574 >seq9 Length=84057508 Score = 87.8 bits (96), Expect = 1e-15 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| |||||||||| || || |||||||||| | || Sbjct 57270269 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 57270328 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | || | ||| ||| |||||| | ||| |||| ||||||| Sbjct 57270329 CTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 57270386 Score = 87.8 bits (96), Expect = 1e-15 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| |||||||||| || || |||||||||| | || Sbjct 74641188 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 74641247 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | || | ||| ||| |||||| | ||| |||| ||||||| Sbjct 74641248 CTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 74641305 >seq6 Length=60730942 Score = 87.8 bits (96), Expect = 1e-15 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| |||||||||| || || |||||||||| | || Sbjct 39225395 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 39225336 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | || | ||| ||| |||||| | ||| |||| ||||||| Sbjct 39225335 CTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 39225278 >seq2 Length=59803892 Score = 86.0 bits (94), Expect = 4e-15 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| |||||||||| || || |||||||||| | || Sbjct 27512980 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 27513039 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 |||||| |||||| | || | ||| ||| |||||| | ||| |||| |||||| Sbjct 27513040 CTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCAC 27513096 >seq7 Length=79292169 Score = 84.2 bits (92), Expect = 2e-14 Identities = 92/121 (76%), Gaps = 6/121 (5%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCAC---CGGATCACTATGAC 57 || |||||||||||||||||| |||||||||| || | ||| |||||||||| | | Sbjct 24084965 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTC---GGCACTGTCGGATCACTAAGGC 24084909 Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 | |||||| |||||| | || | ||| ||| |||||| | ||| |||| |||||| Sbjct 24084908 CGACTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCAC 24084849 Query 118 T 118 | Sbjct 24084848 T 24084848 >seq8 Length=70546659 Score = 73.4 bits (80), Expect = 3e-11 Identities = 87/118 (74%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||| ||||| | |||||||| || || |||||||||| | || Sbjct 46044390 TAACTTTTATCCGTTCAGCGACGACCCTTCCACTCGGCACCGTCGGATCACTAAGTCCAA 46044331 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||| | |||||| | || | ||| ||| |||||| | || ||||| ||||||| Sbjct 46044330 CTTTTGTTCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTGTTGCCTTTGCACT 46044273 >seq4 Length=77197300 Score = 71.6 bits (78), Expect = 1e-10 Identities = 87/119 (73%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || ||| |||||||||||||| | ||||| || || || |||||||||| | || Sbjct 13178470 TAACTTCTATCCGTTGAGCGACGTCCCTTTCACTCGGCACCGTCGGATCACTAAGGCCGA 13178529 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTA 119 |||||| |||||| | || | ||| ||| ||||| | ||| |||| |||||||| Sbjct 13178530 CTTTCGTCCCTGCTCGACGGGTGGATCTTGCAGTCAAGATCCCTTCTGCCTTTGCACTA 13178588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351999960400