Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq7 127 2e-27 seq6 127 2e-27 seq11 120 3e-25 seq12 114 1e-23 >seq7 Length=79292169 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 17553206 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 17553265 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| || || | ||| || ||||||| Sbjct 17553266 GGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGA-GTAATGA 17553323 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 17553324 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 17553383 Query 190 T 190 | Sbjct 17553384 T 17553384 Score = 104 bits (114), Expect = 2e-20 Identities = 134/181 (74%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | ||||| || |||| |||| |||| |||| ||| Sbjct 17530703 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAACAAGCCTACGCTCTGAATTTATTAGCAT 17530762 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||| | | |||| ||||| || || | ||| || ||||||| Sbjct 17530763 GGGATAACATTATAGTATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGA-GTAATGA 17530820 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| |||| ||||| | ||| || |||| |||||||||||||||||||| Sbjct 17530821 TTAACAGGGACAGTCAGGGGTATTCAAATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 17530880 Query 190 T 190 | Sbjct 17530881 T 17530881 Score = 82.4 bits (90), Expect = 8e-14 Identities = 107/144 (74%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 48 CTTTGCTC-GAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAG 106 || ||||| | |||||||| ||||| |||| | |||||| | |||| ||||| || | Sbjct 17634567 CTATGCTCTGTATACATTAGCATGGGATAACATTATAGGATTT-CGGTCCTATTACGTTG 17634625 Query 107 GTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGT 166 | | ||| || |||||||| || | ||| ||||||||| | ||||| || || Sbjct 17634626 GCCTTCCGGATCGGA-GTAATGATTAACAAGGACAGTCGGGGGCATTCGTATTTCATAGT 17634684 Query 167 CAAAGGTGAAATTCTTGGATTTAT 190 || ||||||||||| ||||||||| Sbjct 17634685 CAGAGGTGAAATTCATGGATTTAT 17634708 Score = 77.0 bits (84), Expect = 3e-12 Identities = 99/133 (74%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | |||| ||||| || || | ||| Sbjct 17577734 ATACATTAGCATGGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGAT 17577792 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| |||||||| || ||||| || |||| |||||||| Sbjct 17577793 CGGA-GTAATGATTAACAGGGACAGTCGGGGTATTC-GTATTTCATAGTCATAGGTGAAA 17577850 Query 178 TTCTTGGATTTAT 190 ||| ||||||||| Sbjct 17577851 TTCGTGGATTTAT 17577863 Score = 75.2 bits (82), Expect = 1e-11 Identities = 98/133 (74%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | |||| ||||| || || | ||| Sbjct 17559945 ATACATTAGCATGGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGAT 17560003 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||||||||||||| | ||||| || |||| | | |||| Sbjct 17560004 CGGA-GTAATGATTAACAGGGATAGTCGGGGGCATTCGTATTTCATAGTCATATGAGAAA 17560062 Query 178 TTCTTGGATTTAT 190 ||| ||||||||| Sbjct 17560063 TTCATGGATTTAT 17560075 Score = 73.4 bits (80), Expect = 4e-11 Identities = 99/134 (74%), Gaps = 3/134 (2%) Strand=Plus/Plus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| |||| |||| | |||||| | |||| |||| || ||||| ||| Sbjct 17599190 ATACATTAGAATGGGATAACATTATAGGATTT-CGGTCATATTACGTTGGTTTTCGGGAT 17599248 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTG-TCAGTATTCAATTGTCAAAGGTGAA 176 || |||||||| || | ||| ||||||||| | ||||| | |||| ||||||| Sbjct 17599249 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCCATTCGTATTTCTTAGTCAGAGGTGAA 17599307 Query 177 ATTCTTGGATTTAT 190 |||||||||||||| Sbjct 17599308 ATTCTTGGATTTAT 17599321 >seq6 Length=60730942 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 25717601 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 25717542 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| || || | ||| || ||||||| Sbjct 25717541 GGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGA-GTAATGA 25717484 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 25717483 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 25717424 Query 190 T 190 | Sbjct 25717423 T 25717423 Score = 105 bits (116), Expect = 7e-21 Identities = 135/181 (75%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 10199262 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCATGCCTACGCTCTGTATACATTAGCAT 10199321 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| || |||||| | |||| ||||| | || | ||| || |||||| Sbjct 10199322 GGGATAACAGTATAGGATTT-CGGTCCTATTACATTGGCCTTCGGGATCGGAA-TAATGA 10199379 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | | | ||| ||||| | ||||| || || | |||||||||||||||||||| Sbjct 10199380 TTAAAAGGAACAGTTGGGGGCATTCGTATTTCATAGT-AGAGGTGAAATTCTTGGATTTA 10199438 Query 190 T 190 | Sbjct 10199439 T 10199439 >seq11 Length=66223686 Score = 120 bits (132), Expect = 3e-25 Identities = 138/182 (76%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGA-ATACATTACCA 68 ||| |||||||||| ||||||||| | |||||| | |||| ||||| | |||||||| || Sbjct 19692947 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGTAAGCCTATGCTCTATATACATTAGCA 19693006 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||| |||| | | |||| | |||| ||||| || || | |||| | |||||| Sbjct 19693007 TGGGATAACATTAGAGGATTT-CGGTCCTATTACGTTGGCCTTCAGGATTGGA-GTAATG 19693064 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 | |||| ||| |||| |||| | ||||| || |||| ||||||||||||||||||| Sbjct 19693065 TTTAATAGGGACAGTCAGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 19693124 Query 189 AT 190 || Sbjct 19693125 AT 19693126 >seq12 Length=83305730 Score = 114 bits (126), Expect = 1e-23 Identities = 137/182 (75%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68 ||| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| || Sbjct 65053830 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCA 65053889 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||| |||| | |||||| | |||| ||||| || || | ||| | |||||| Sbjct 65053890 TGGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATTGGA-GTAATG 65053947 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 | |||| ||| ||||| ||| | ||||| || |||| |||||||||||||||| || Sbjct 65053948 TTTAATAGGGACAGTCGCGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGACTT 65054007 Query 189 AT 190 || Sbjct 65054008 AT 65054009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511999940480