Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq6 123 5e-26 seq5 116 8e-24 seq10 107 4e-21 seq1 107 4e-21 seq11 104 5e-20 seq2 100 6e-19 >seq6 Length=60730942 Score = 123 bits (136), Expect = 5e-26 Identities = 194/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 39219726 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 39219678 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 39219677 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 39219625 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 39219624 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 39219565 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 39219564 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 39219505 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 39219504 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 39219466 Score = 80.6 bits (88), Expect = 6e-13 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174 |||||| | | |||| || | || | | |||||| |||| ||||| |||| ||||| | Sbjct 15642329 TCACGCGATATTTCTGGATCGGGCTTTTGCCCATTGTCCAAGATTCCCCACTTCTGCCCC 15642270 Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGG 211 |||| ||||| ||| |||||||||||| ||| ||||| Sbjct 15642269 CCGTGGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGG 15642233 >seq5 Length=77991103 Score = 116 bits (128), Expect = 8e-24 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 17815946 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 17815887 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 17815886 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 17815827 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 17815826 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 17815767 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 17815766 GCAGGCTCATCAAACAGCG 17815748 >seq10 Length=82529941 Score = 107 bits (118), Expect = 4e-21 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||||| ||| ||||| | | ||| ||| || Sbjct 42976632 AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCACGCTT 42976574 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| |||||||| ||||| |||||||||||||||| ||| || |||||||| Sbjct 42976573 TCGCCCATTGCGGAATATTCCCCACTGTTGCCTCCCGTAGGAGTCTGGGCCATGTCTCAG 42976514 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||| | || | ||||||| ||| ||| ||| | | || ||| || || Sbjct 42976513 TCCCAGTGTTGCTGATCATCCTCTCGGAAGAGCTACTGATCATCGCCTTGGTAAGCTATT 42976454 Query 261 ACCCCGCCTACTACCTAATGGAACGC-ATCCCC 292 || | || | || ||||| |||| |||||| Sbjct 42976453 GCCTCACCAAATAGCTAATCAGACGCGATCCCC 42976421 Score = 96.9 bits (106), Expect = 7e-18 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | | ||| ||| ||||| | | ||| |||| || Sbjct 1879176 AAAAGAAGTTCACGACCCGTGGGTC-TTCTACCTCCACGCGGCATTGCTCCGTCAGGCTT 1879234 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCC-GTAGGAGTTTGGACCGTGTCTCA 199 ||| ||||| || ||||| |||||||||||||| | |||||| ||| |||||||||| Sbjct 1879235 TCGCTCATTGCGGAAAATTCCCCACTGCTGCCTCCCCGCAGGAGTCTGGGCCGTGTCTCA 1879294 Query 200 GTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGT 259 || ||| ||| | || | ||||||| || | ||| ||| | | || ||| || | Sbjct 1879295 GTCCCAGTGTAGCTGATCATCCTCTCGGATCAGCTACTGATCATCGCCTTGGTAAGCTAT 1879354 Query 260 TACCCCGCCTACTACCTAAT 279 | || | || |||| ||||| Sbjct 1879355 TGCCTCACCAACTAGCTAAT 1879374 >seq1 Length=109333515 Score = 107 bits (118), Expect = 4e-21 Identities = 144/199 (72%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | | |||| | ||||| ||| ||||| | | ||| |||| || Sbjct 82007055 AAAAGAAGTTCATGACCCGTGGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTT 82007113 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||| ||||||||| ||||||| ||| ||||||||||| Sbjct 82007114 TCGCCCATTGCGGAAAATTCCCCACTACTGCCTCCCATAGGAGTCTGGGCCGTGTCTCAG 82007173 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 82007174 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTAATCATCGCCTTGGTAAGCTATT 82007233 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 82007234 GCCTCACCAACTAGCTAAT 82007252 >seq11 Length=66223686 Score = 104 bits (114), Expect = 5e-20 Identities = 115/151 (76%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||||| ||| | || || | ||| |||| Sbjct 42811363 AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCGCGGGACATTGCTCTGTCAGGGCT 42811421 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||||||||||| || ||||| |||||||||||||| ||||||| ||| |||||||| | Sbjct 42811422 TCGTCCATTGAGAAAAATTCCCCACTGCTGCCTCCCTTAGGAGTCTGGGTCGTGTCTCCG 42811481 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACC 231 | ||| ||||| || ||||||||| ||||| Sbjct 42811482 TCCCAGTGTGGCTGATCTTCCTCTC-GAACC 42811511 Score = 95.1 bits (104), Expect = 3e-17 Identities = 141/199 (71%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | ||| | || ||| ||| ||||| | | ||| |||| || Sbjct 46376160 AAAAGAAGTTCACCACTCGTGGGAC-TTCTACCTCCACGCGGCATTGCTCCGTCAGGCTT 46376218 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 || |||||| || ||||| |||| |||||||| ||| |||| ||| ||||||||||| Sbjct 46376219 TCTTCCATTACGGAAAATTCCCCACTACTGCCTCCTGTAAGAGTCTGGGCCGTGTCTCAG 46376278 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | | | ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 46376279 TCCAAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 46376338 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 46376339 GCCTCACCAACTAGCTAAT 46376357 Score = 89.7 bits (98), Expect = 1e-15 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | || ||| ||| ||||| | ||| | || || Sbjct 46404560 AAAAGAAGTTCACGACCCGTGGGAC-TTCTACCTCCACGCGGTATTGCTCCATTAGGCTT 46404502 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| ||||||| |||||||||||||| ||| | ||||||||| Sbjct 46404501 TCGCCCATTGCGGAAAATTCCCCACTGCTACCTCCCGTAGGAGTCTGGGCTGTGTCTCAG 46404442 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACC 231 | | ||||| || | ||||||| ||||| Sbjct 46404441 TCTTAGTGTGGCTGATCATCCTCTC-GAACC 46404412 >seq2 Length=59803892 Score = 100 bits (110), Expect = 6e-19 Identities = 159/229 (69%), Gaps = 18/229 (8%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| ||||||||| |||||||||| || ||| || | Sbjct 27520457 GGCTGCTGGCACAGAGTTAGCCAATGCTTATTCCCCAGATACCGTCAT-----------T 27520505 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| || ||||| |||| || | |||| | ||||| ||| ||| | Sbjct 27520506 GC------TTCTTCTCTGGGAAAAGGAGTTCACGACCCGTGGG-CCTTCTACCTCCACTC 27520558 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| ||| || || |||||| || ||||| |||||||||||||||||| Sbjct 27520559 GGCATTGCTCCGCCAGTCTTTCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 27520618 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAA 229 |||| ||| |||||||||||| ||| ||||| || | ||||||| ||| Sbjct 27520619 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGAA 27520667 Score = 89.7 bits (98), Expect = 1e-15 Identities = 129/181 (71%), Gaps = 1/181 (1%) Strand=Plus/Plus Query 72 TTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGG 131 ||| || ||||| ||||| || | |||| | ||||| ||| ||||| || | ||| Sbjct 5458729 TTCTCTGGTAAAATAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGCGACATTGCTCC 5458787 Query 132 TTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACC 191 ||| || ||||||||||| | ||| | |||||||||||| ||| |||| ||| | Sbjct 5458788 GTCAAGCTTTCGTCCATTGAATTAAATTTCCAACTGCTGCCTCCTGTAAGAGTCTGGGTC 5458847 Query 192 GTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGG 251 |||||||| | ||| ||| || | |||||||||| | ||| |||| | | || || Sbjct 5458848 GTGTCTCAATCCCAGTGTAACTGATCATCCTCTCAGACCAGCTACTCATCATCGCCTTGG 5458907 Query 252 T 252 | Sbjct 5458908 T 5458908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068799871744