Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq12 107 3e-21 seq8 107 3e-21 seq7 107 3e-21 >seq12 Length=83305730 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | |||||| | ||| || ||| || |||| Sbjct 64614689 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGCCATCGCGCTTGGTTGAAAAGCCAGT 64614632 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | |||||||||||| |||||||||||||||||||||||| || | Sbjct 64614631 GGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 64614572 Query 121 GAA 123 ||| Sbjct 64614571 GAA 64614569 >seq8 Length=70546659 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | |||||| | ||| || ||| || |||| Sbjct 62370889 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGCCATCGCGCTTGGTTGAAAAGCCAGT 62370946 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | |||||||||||| |||||||||||||||||||||||| || | Sbjct 62370947 GGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 62371006 Query 121 GAA 123 ||| Sbjct 62371007 GAA 62371009 >seq7 Length=79292169 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | |||||| | ||| || ||| || |||| Sbjct 17557897 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGCCATCGCGCTTGGTTGAAAAGCCAGT 17557954 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | |||||||||||| |||||||||||||||||||||||| || | Sbjct 17557955 GGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 17558014 Query 121 GAA 123 ||| Sbjct 17558015 GAA 17558017 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | |||||| | ||| || ||| || |||| Sbjct 17624404 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGCCATCGCGCTTGGTTGAAAAGCCAGT 17624461 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | || ||||||||| | |||||||||||| ||||||||||||||||||||||||| || | Sbjct 17624462 GGCGTGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCAGGCTA 17624521 Query 121 GAA 123 ||| Sbjct 17624522 GAA 17624524 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | |||||| | ||| || ||| | |||| Sbjct 17662120 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGCCATCGCGCTTGGTTGAAAATCCAGT 17662177 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||| || |||||| |||||||||||||||||| || | Sbjct 17662178 GGCGCGAAGCTACCGTGTGCTGGATTTTGACTGAACTCCTCTAAGTCAGAATCCAGGCTA 17662237 Query 121 GAA 123 ||| Sbjct 17662238 GAA 17662240 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || || |||| | |||||| | ||| | ||| || |||| Sbjct 17536484 GTACGAGAGGAACAGCTGA-TTCACAC-AATTGGCCATCGCGCTTAGTTGAAAAGCCAGT 17536541 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | |||||||||||| |||||||||||||||||| | ||| || | Sbjct 17536542 GGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCATATTCCGGGCTA 17536601 Query 121 GAA 123 ||| Sbjct 17536602 GAA 17536604 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||| | |||||| | ||| | ||| || |||| Sbjct 17564236 GTACGAGAGGAACCGCTGA-TTCACAC-AATTGGCCATCGCGCTTAGTTGAAAAGCCAGT 17564293 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | |||||||||||| ||||||||||||| |||| | ||| || | Sbjct 17564294 GGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTATGTCATATTCCGGGCTA 17564353 Query 121 GAA 123 ||| Sbjct 17564354 GAA 17564356 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||| | |||||| | ||| || | | || |||| Sbjct 17642295 GTACGAGAGGAACCGTTGG-TTCACAC-AATTGGCCATCGCGCATGGTTTAAAAGCCAGT 17642352 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | |||||||||| | |||||||||||| |||||||||||||||||||||||| Sbjct 17642353 GGCACGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCC 17642406 Score = 84.2 bits (92), Expect = 4e-14 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | |||||| | ||| || ||| || ||| Sbjct 36741614 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGCCATCGCGCTTGGTTGAAAAGCAAGT 36741557 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | || ||||||||| | ||||||||||| ||||||||||||| ||||||||| || | Sbjct 36741556 GGCGTGAAGCTACCGTGTGCTGGATTATCATTGAACGCCTCTAAATCAGAATCCGGGCTA 36741497 Query 121 GAA 123 ||| Sbjct 36741496 GAA 36741494 Score = 82.4 bits (90), Expect = 1e-13 Identities = 87/112 (78%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||| | || |||| || |||||| | || || ||| || |||| Sbjct 55084260 GTACGAGAGGAATTGTTGA-TTCACAA-AATTGGCCATCGCTCTTGGTTGAAAAGACAGT 55084203 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 | |||||||||||||| |||||||||||| |||| |||||||||| ||||| Sbjct 55084202 GGCGCGAAGCTACCATGTGCTGGATTATGAGTGAATGCCTCTAAGTAAGAAT 55084151 Score = 80.6 bits (88), Expect = 4e-13 Identities = 92/123 (75%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || | | | ||||||| | || | ||| || |||| Sbjct 17581925 GTACGAGAGGAACCGCTGATT--AACACAATTGGTCATCACGCTTAGTTGAAAAGCCAGT 17581982 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||| |||| | |||||||||||| ||||| |||||||||| | | ||| || | Sbjct 17581983 GGCGCGAAGTTACCGTGTGCTGGATTATGACTGAATGCCTCTAAGTGATATTCCGGGCAA 17582042 Query 121 GAA 123 ||| Sbjct 17582043 GAA 17582045 Score = 75.2 bits (82), Expect = 2e-11 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 || ||||| |||||||||||||| |||||||||||| |||| |||||||||| ||||| Sbjct 52179823 AGACAGTGGCGCGAAGCTACCATGTGCTGGATTATGAGTGAATGCCTCTAAGTAAGAAT 52179881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819199904768